/dports/biology/ugene/ugene-40.1/data/workflow_samples/Scenarios/ |
H A D | intersect_annotations.uwl | 41 intersect-annotations.output-intersect-annotations->write-annotations.in-annotations 42 read-annotations-1.out-annotations->intersect-annotations.input-annotations-b 43 read-annotations.out-annotations->intersect-annotations.input-annotations-a 46 read-annotations.annotations->intersect-annotations.input-annotations-a.input-annotations-a 47 read-annotations-1.annotations->intersect-annotations.input-annotations-b.input-annotations-b 48 intersect-annotations.output-intersect-annotations->write-annotations.in-annotations.annotations 49 read-annotations-1.annotations->write-annotations.in-annotations.annotations 50 read-annotations.annotations->write-annotations.in-annotations.annotations 105 intersect-annotations.output-intersect-annotations->write-annotations.in-annotations { 108 read-annotations-1.out-annotations->intersect-annotations.input-annotations-b { [all …]
|
/dports/www/firefox-legacy/firefox-52.8.0esr/testing/web-platform/tests/annotation-model/annotations/ |
H A D | annotationOptionals.test | 12 "annotations/3.2.5-bodyValueImplemented.json", 19 "annotations/3.3.7-annotationViaImplemented.json", 21 "annotations/3.1-bodyKeyFound.json", 28 "annotations/bodiesTargets/3.2.2-bodyType.json", 37 "annotations/bodiesTargets/3.3.7-bodyVia.json", 38 "annotations/bodiesTargets/3.2.1-bodyEWR.json", 39 "annotations/bodiesTargets/3.2.4-bodyETB.json", 44 "annotations/bodiesTargets/3.2.8-bodyList.json", 62 "annotations/bodiesTargets/3.3.7-targVia.json", 63 "annotations/bodiesTargets/3.2.1-targEWR.json", [all …]
|
H A D | annotationMusts.test | 8 "annotations/3.1-annotationContextValidated.json", 9 "annotations/3.1-annotationIdValidated.json", 10 "annotations/3.1-annotationTypeValidated.json", 11 "annotations/3.1-targetKeyFound.json", 12 "annotations/3.2-targetObjectsRecognized.json", 13 "annotations/3.2.5-notBodyBodyValue.json", 14 "annotations/3.2-bodyObjectsRecognized.json", 15 "annotations/3.2.5-bodyValueValidated.json", 16 "annotations/3.3.1-annotationCreatedValidated.json", 19 "annotations/3.3.6-annotationRightsValidated.json", [all …]
|
H A D | annotationsAgentOptionals.test | 10 "annotations/3.3.1-annotationCreatorImplemented.json", 11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json", 12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json", 15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json", 16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json", 19 "annotations/3.3.1-annotationGeneratorImplemented.json", 20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json", 21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json", 24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json", 28 "annotations/bodiesTargets/3.3.1-bodyCreator.json", [all …]
|
/dports/biology/py-biopython/biopython-1.79/Tests/ |
H A D | test_SeqIO_AbiIO.py | 286 raw_keys = record.annotations["abif_raw"] 317 self.assertCountEqual(record.annotations, 321 self.assertCountEqual(record.annotations["abif_raw"].keys(), 354 self.assertEqual(record.annotations["abif_raw"]["APXV1"], b"2") 356 self.assertEqual(record.annotations["abif_raw"]["APrV1"], b"3") 372 self.assertEqual(record.annotations["abif_raw"]["ARTN1"], 0) 373 self.assertEqual(record.annotations["abif_raw"]["ASPF1"], 1) 374 self.assertEqual(record.annotations["abif_raw"]["ASPt1"], 2430) 375 self.assertEqual(record.annotations["abif_raw"]["ASPt2"], 2430) 376 self.assertEqual(record.annotations["abif_raw"]["B1Pt1"], 2429) [all …]
|
H A D | test_Uniprot.py | 79 seq_record.annotations["taxonomy"], 88 seq_record.annotations["keywords"], 110 seq_record.annotations["organism"], 461 for key in set(old.annotations).intersection(new.annotations): 466 old.annotations[key], type(new.annotations[key]), msg="key=%s" % key 469 self.assertEqual(len(old.annotations[key]), len(new.annotations[key])) 470 for r1, r2 in zip(old.annotations[key], new.annotations[key]): 484 old.annotations[key] == new.annotations[key] 485 or old.annotations[key].startswith(new.annotations[key] + " ") 489 sorted(old.annotations[key]), sorted(new.annotations[key]) [all …]
|
/dports/www/firefox-esr/firefox-91.8.0/testing/web-platform/tests/annotation-model/annotations/ |
H A D | annotationOptionals.test | 12 "annotations/3.2.5-bodyValueImplemented.json", 19 "annotations/3.3.7-annotationViaImplemented.json", 21 "annotations/3.1-bodyKeyFound.json", 28 "annotations/bodiesTargets/3.2.2-bodyType.json", 37 "annotations/bodiesTargets/3.3.7-bodyVia.json", 38 "annotations/bodiesTargets/3.2.1-bodyEWR.json", 39 "annotations/bodiesTargets/3.2.4-bodyETB.json", 49 "annotations/bodiesTargets/3.2.2-targType.json", 58 "annotations/bodiesTargets/3.3.7-targVia.json", 59 "annotations/bodiesTargets/3.2.1-targEWR.json", [all …]
|
H A D | annotationMusts.test | 8 "annotations/3.1-annotationContextValidated.json", 9 "annotations/3.1-annotationIdValidated.json", 10 "annotations/3.1-annotationTypeValidated.json", 11 "annotations/3.1-targetKeyFound.json", 12 "annotations/3.2-targetObjectsRecognized.json", 13 "annotations/3.2.5-notBodyBodyValue.json", 14 "annotations/3.2-bodyObjectsRecognized.json", 15 "annotations/3.2.5-bodyValueValidated.json", 16 "annotations/3.3.1-annotationCreatedValidated.json", 19 "annotations/3.3.6-annotationRightsValidated.json", [all …]
|
H A D | annotationsAgentOptionals.test | 10 "annotations/3.3.1-annotationCreatorImplemented.json", 11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json", 12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json", 15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json", 16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json", 19 "annotations/3.3.1-annotationGeneratorImplemented.json", 20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json", 21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json", 24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json", 28 "annotations/bodiesTargets/3.3.1-bodyCreator.json", [all …]
|
/dports/www/firefox/firefox-99.0/testing/web-platform/tests/annotation-model/annotations/ |
H A D | annotationOptionals.test | 12 "annotations/3.2.5-bodyValueImplemented.json", 19 "annotations/3.3.7-annotationViaImplemented.json", 21 "annotations/3.1-bodyKeyFound.json", 28 "annotations/bodiesTargets/3.2.2-bodyType.json", 37 "annotations/bodiesTargets/3.3.7-bodyVia.json", 38 "annotations/bodiesTargets/3.2.1-bodyEWR.json", 39 "annotations/bodiesTargets/3.2.4-bodyETB.json", 49 "annotations/bodiesTargets/3.2.2-targType.json", 58 "annotations/bodiesTargets/3.3.7-targVia.json", 59 "annotations/bodiesTargets/3.2.1-targEWR.json", [all …]
|
H A D | annotationMusts.test | 8 "annotations/3.1-annotationContextValidated.json", 9 "annotations/3.1-annotationIdValidated.json", 10 "annotations/3.1-annotationTypeValidated.json", 11 "annotations/3.1-targetKeyFound.json", 12 "annotations/3.2-targetObjectsRecognized.json", 13 "annotations/3.2.5-notBodyBodyValue.json", 14 "annotations/3.2-bodyObjectsRecognized.json", 15 "annotations/3.2.5-bodyValueValidated.json", 16 "annotations/3.3.1-annotationCreatedValidated.json", 19 "annotations/3.3.6-annotationRightsValidated.json", [all …]
|
H A D | annotationsAgentOptionals.test | 10 "annotations/3.3.1-annotationCreatorImplemented.json", 11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json", 12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json", 15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json", 16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json", 19 "annotations/3.3.1-annotationGeneratorImplemented.json", 20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json", 21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json", 24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json", 28 "annotations/bodiesTargets/3.3.1-bodyCreator.json", [all …]
|
/dports/mail/thunderbird/thunderbird-91.8.0/testing/web-platform/tests/annotation-model/annotations/ |
H A D | annotationOptionals.test | 12 "annotations/3.2.5-bodyValueImplemented.json", 19 "annotations/3.3.7-annotationViaImplemented.json", 21 "annotations/3.1-bodyKeyFound.json", 28 "annotations/bodiesTargets/3.2.2-bodyType.json", 37 "annotations/bodiesTargets/3.3.7-bodyVia.json", 38 "annotations/bodiesTargets/3.2.1-bodyEWR.json", 39 "annotations/bodiesTargets/3.2.4-bodyETB.json", 49 "annotations/bodiesTargets/3.2.2-targType.json", 58 "annotations/bodiesTargets/3.3.7-targVia.json", 59 "annotations/bodiesTargets/3.2.1-targEWR.json", [all …]
|
H A D | annotationMusts.test | 8 "annotations/3.1-annotationContextValidated.json", 9 "annotations/3.1-annotationIdValidated.json", 10 "annotations/3.1-annotationTypeValidated.json", 11 "annotations/3.1-targetKeyFound.json", 12 "annotations/3.2-targetObjectsRecognized.json", 13 "annotations/3.2.5-notBodyBodyValue.json", 14 "annotations/3.2-bodyObjectsRecognized.json", 15 "annotations/3.2.5-bodyValueValidated.json", 16 "annotations/3.3.1-annotationCreatedValidated.json", 19 "annotations/3.3.6-annotationRightsValidated.json", [all …]
|
H A D | annotationsAgentOptionals.test | 10 "annotations/3.3.1-annotationCreatorImplemented.json", 11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json", 12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json", 15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json", 16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json", 19 "annotations/3.3.1-annotationGeneratorImplemented.json", 20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json", 21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json", 24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json", 28 "annotations/bodiesTargets/3.3.1-bodyCreator.json", [all …]
|
/dports/lang/spidermonkey60/firefox-60.9.0/testing/web-platform/tests/annotation-model/annotations/ |
H A D | annotationOptionals.test | 12 "annotations/3.2.5-bodyValueImplemented.json", 19 "annotations/3.3.7-annotationViaImplemented.json", 21 "annotations/3.1-bodyKeyFound.json", 28 "annotations/bodiesTargets/3.2.2-bodyType.json", 37 "annotations/bodiesTargets/3.3.7-bodyVia.json", 38 "annotations/bodiesTargets/3.2.1-bodyEWR.json", 39 "annotations/bodiesTargets/3.2.4-bodyETB.json", 49 "annotations/bodiesTargets/3.2.2-targType.json", 58 "annotations/bodiesTargets/3.3.7-targVia.json", 59 "annotations/bodiesTargets/3.2.1-targEWR.json", [all …]
|
H A D | annotationMusts.test | 8 "annotations/3.1-annotationContextValidated.json", 9 "annotations/3.1-annotationIdValidated.json", 10 "annotations/3.1-annotationTypeValidated.json", 11 "annotations/3.1-targetKeyFound.json", 12 "annotations/3.2-targetObjectsRecognized.json", 13 "annotations/3.2.5-notBodyBodyValue.json", 14 "annotations/3.2-bodyObjectsRecognized.json", 15 "annotations/3.2.5-bodyValueValidated.json", 16 "annotations/3.3.1-annotationCreatedValidated.json", 19 "annotations/3.3.6-annotationRightsValidated.json", [all …]
|
H A D | annotationsAgentOptionals.test | 10 "annotations/3.3.1-annotationCreatorImplemented.json", 11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json", 12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json", 15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json", 16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json", 19 "annotations/3.3.1-annotationGeneratorImplemented.json", 20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json", 21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json", 24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json", 28 "annotations/bodiesTargets/3.3.1-bodyCreator.json", [all …]
|
/dports/lang/spidermonkey78/firefox-78.9.0/testing/web-platform/tests/annotation-model/annotations/ |
H A D | annotationOptionals.test | 12 "annotations/3.2.5-bodyValueImplemented.json", 19 "annotations/3.3.7-annotationViaImplemented.json", 21 "annotations/3.1-bodyKeyFound.json", 28 "annotations/bodiesTargets/3.2.2-bodyType.json", 37 "annotations/bodiesTargets/3.3.7-bodyVia.json", 38 "annotations/bodiesTargets/3.2.1-bodyEWR.json", 39 "annotations/bodiesTargets/3.2.4-bodyETB.json", 49 "annotations/bodiesTargets/3.2.2-targType.json", 58 "annotations/bodiesTargets/3.3.7-targVia.json", 59 "annotations/bodiesTargets/3.2.1-targEWR.json", [all …]
|
H A D | annotationMusts.test | 8 "annotations/3.1-annotationContextValidated.json", 9 "annotations/3.1-annotationIdValidated.json", 10 "annotations/3.1-annotationTypeValidated.json", 11 "annotations/3.1-targetKeyFound.json", 12 "annotations/3.2-targetObjectsRecognized.json", 13 "annotations/3.2.5-notBodyBodyValue.json", 14 "annotations/3.2-bodyObjectsRecognized.json", 15 "annotations/3.2.5-bodyValueValidated.json", 16 "annotations/3.3.1-annotationCreatedValidated.json", 19 "annotations/3.3.6-annotationRightsValidated.json", [all …]
|
H A D | annotationsAgentOptionals.test | 10 "annotations/3.3.1-annotationCreatorImplemented.json", 11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json", 12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json", 15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json", 16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json", 19 "annotations/3.3.1-annotationGeneratorImplemented.json", 20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json", 21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json", 24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json", 28 "annotations/bodiesTargets/3.3.1-bodyCreator.json", [all …]
|
/dports/biology/jalview/jalview/src/jalview/datamodel/ |
H A D | AlignmentAnnotation.java | 338 this.annotations = annotations; in AlignmentAnnotation() 613 this.annotations = annotations; in AlignmentAnnotation() 627 if (annotations == null) in validateRangeAndDisplay() 816 if (annotations == null) in restrict() 833 if (annotations == null) in restrict() 864 annotations = temp; in restrict() 876 if (annotations == null) in padAnnotation() 884 System.arraycopy(annotations, 0, na, 0, annotations.length); in padAnnotation() 885 annotations = na; in padAnnotation() 1043 annotations = temp; in adjustForAlignment() [all …]
|
/dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/tests/annotation/ |
H A D | test_annotate_samples.py | 85 self.assertEqual(type(annotations), Table) 116 self.assertEqual(type(annotations), Table) 138 self.assertEqual(type(annotations), Table) 152 self.assertEqual(type(annotations), Table) 161 self.assertEqual(type(annotations), Table) 219 self.assertEqual(type(annotations), Table) 229 self.assertEqual(type(annotations), Table) 241 self.assertEqual(type(annotations), Table) 248 self.assertEqual(type(annotations), Table) 265 self.assertEqual(type(annotations), Table) [all …]
|
/dports/devel/fbthrift/fbthrift-2021.12.27.00/thrift/compiler/test/fixtures/mcpp2-compare/gen-py3/module/ |
H A D | services_reflection.pyx | 24 annotations={ 33 annotations={ 45 annotations={ 58 annotations={ 71 annotations={ 84 annotations={ 97 annotations={ 110 annotations={ 123 annotations={ 136 annotations={ [all …]
|
/dports/devel/fbthrift/fbthrift-2021.12.27.00/thrift/compiler/test/fixtures/py3/gen-py3/module/ |
H A D | services_reflection.pyx | 23 annotations={ 35 annotations={ 55 annotations={ 68 annotations={ 95 annotations={ 115 annotations={ 135 annotations={ 155 annotations={ 175 annotations={ 846 annotations={ [all …]
|