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/dports/biology/ugene/ugene-40.1/data/workflow_samples/Scenarios/
H A Dintersect_annotations.uwl41 intersect-annotations.output-intersect-annotations->write-annotations.in-annotations
42 read-annotations-1.out-annotations->intersect-annotations.input-annotations-b
43 read-annotations.out-annotations->intersect-annotations.input-annotations-a
46 read-annotations.annotations->intersect-annotations.input-annotations-a.input-annotations-a
47 read-annotations-1.annotations->intersect-annotations.input-annotations-b.input-annotations-b
48 intersect-annotations.output-intersect-annotations->write-annotations.in-annotations.annotations
49 read-annotations-1.annotations->write-annotations.in-annotations.annotations
50 read-annotations.annotations->write-annotations.in-annotations.annotations
105 intersect-annotations.output-intersect-annotations->write-annotations.in-annotations {
108 read-annotations-1.out-annotations->intersect-annotations.input-annotations-b {
[all …]
/dports/www/firefox-legacy/firefox-52.8.0esr/testing/web-platform/tests/annotation-model/annotations/
H A DannotationOptionals.test12 "annotations/3.2.5-bodyValueImplemented.json",
19 "annotations/3.3.7-annotationViaImplemented.json",
21 "annotations/3.1-bodyKeyFound.json",
28 "annotations/bodiesTargets/3.2.2-bodyType.json",
37 "annotations/bodiesTargets/3.3.7-bodyVia.json",
38 "annotations/bodiesTargets/3.2.1-bodyEWR.json",
39 "annotations/bodiesTargets/3.2.4-bodyETB.json",
44 "annotations/bodiesTargets/3.2.8-bodyList.json",
62 "annotations/bodiesTargets/3.3.7-targVia.json",
63 "annotations/bodiesTargets/3.2.1-targEWR.json",
[all …]
H A DannotationMusts.test8 "annotations/3.1-annotationContextValidated.json",
9 "annotations/3.1-annotationIdValidated.json",
10 "annotations/3.1-annotationTypeValidated.json",
11 "annotations/3.1-targetKeyFound.json",
12 "annotations/3.2-targetObjectsRecognized.json",
13 "annotations/3.2.5-notBodyBodyValue.json",
14 "annotations/3.2-bodyObjectsRecognized.json",
15 "annotations/3.2.5-bodyValueValidated.json",
16 "annotations/3.3.1-annotationCreatedValidated.json",
19 "annotations/3.3.6-annotationRightsValidated.json",
[all …]
H A DannotationsAgentOptionals.test10 "annotations/3.3.1-annotationCreatorImplemented.json",
11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json",
12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json",
15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json",
16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json",
19 "annotations/3.3.1-annotationGeneratorImplemented.json",
20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json",
21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json",
24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json",
28 "annotations/bodiesTargets/3.3.1-bodyCreator.json",
[all …]
/dports/biology/py-biopython/biopython-1.79/Tests/
H A Dtest_SeqIO_AbiIO.py286 raw_keys = record.annotations["abif_raw"]
317 self.assertCountEqual(record.annotations,
321 self.assertCountEqual(record.annotations["abif_raw"].keys(),
354 self.assertEqual(record.annotations["abif_raw"]["APXV1"], b"2")
356 self.assertEqual(record.annotations["abif_raw"]["APrV1"], b"3")
372 self.assertEqual(record.annotations["abif_raw"]["ARTN1"], 0)
373 self.assertEqual(record.annotations["abif_raw"]["ASPF1"], 1)
374 self.assertEqual(record.annotations["abif_raw"]["ASPt1"], 2430)
375 self.assertEqual(record.annotations["abif_raw"]["ASPt2"], 2430)
376 self.assertEqual(record.annotations["abif_raw"]["B1Pt1"], 2429)
[all …]
H A Dtest_Uniprot.py79 seq_record.annotations["taxonomy"],
88 seq_record.annotations["keywords"],
110 seq_record.annotations["organism"],
461 for key in set(old.annotations).intersection(new.annotations):
466 old.annotations[key], type(new.annotations[key]), msg="key=%s" % key
469 self.assertEqual(len(old.annotations[key]), len(new.annotations[key]))
470 for r1, r2 in zip(old.annotations[key], new.annotations[key]):
484 old.annotations[key] == new.annotations[key]
485 or old.annotations[key].startswith(new.annotations[key] + " ")
489 sorted(old.annotations[key]), sorted(new.annotations[key])
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/dports/www/firefox-esr/firefox-91.8.0/testing/web-platform/tests/annotation-model/annotations/
H A DannotationOptionals.test12 "annotations/3.2.5-bodyValueImplemented.json",
19 "annotations/3.3.7-annotationViaImplemented.json",
21 "annotations/3.1-bodyKeyFound.json",
28 "annotations/bodiesTargets/3.2.2-bodyType.json",
37 "annotations/bodiesTargets/3.3.7-bodyVia.json",
38 "annotations/bodiesTargets/3.2.1-bodyEWR.json",
39 "annotations/bodiesTargets/3.2.4-bodyETB.json",
49 "annotations/bodiesTargets/3.2.2-targType.json",
58 "annotations/bodiesTargets/3.3.7-targVia.json",
59 "annotations/bodiesTargets/3.2.1-targEWR.json",
[all …]
H A DannotationMusts.test8 "annotations/3.1-annotationContextValidated.json",
9 "annotations/3.1-annotationIdValidated.json",
10 "annotations/3.1-annotationTypeValidated.json",
11 "annotations/3.1-targetKeyFound.json",
12 "annotations/3.2-targetObjectsRecognized.json",
13 "annotations/3.2.5-notBodyBodyValue.json",
14 "annotations/3.2-bodyObjectsRecognized.json",
15 "annotations/3.2.5-bodyValueValidated.json",
16 "annotations/3.3.1-annotationCreatedValidated.json",
19 "annotations/3.3.6-annotationRightsValidated.json",
[all …]
H A DannotationsAgentOptionals.test10 "annotations/3.3.1-annotationCreatorImplemented.json",
11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json",
12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json",
15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json",
16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json",
19 "annotations/3.3.1-annotationGeneratorImplemented.json",
20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json",
21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json",
24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json",
28 "annotations/bodiesTargets/3.3.1-bodyCreator.json",
[all …]
/dports/www/firefox/firefox-99.0/testing/web-platform/tests/annotation-model/annotations/
H A DannotationOptionals.test12 "annotations/3.2.5-bodyValueImplemented.json",
19 "annotations/3.3.7-annotationViaImplemented.json",
21 "annotations/3.1-bodyKeyFound.json",
28 "annotations/bodiesTargets/3.2.2-bodyType.json",
37 "annotations/bodiesTargets/3.3.7-bodyVia.json",
38 "annotations/bodiesTargets/3.2.1-bodyEWR.json",
39 "annotations/bodiesTargets/3.2.4-bodyETB.json",
49 "annotations/bodiesTargets/3.2.2-targType.json",
58 "annotations/bodiesTargets/3.3.7-targVia.json",
59 "annotations/bodiesTargets/3.2.1-targEWR.json",
[all …]
H A DannotationMusts.test8 "annotations/3.1-annotationContextValidated.json",
9 "annotations/3.1-annotationIdValidated.json",
10 "annotations/3.1-annotationTypeValidated.json",
11 "annotations/3.1-targetKeyFound.json",
12 "annotations/3.2-targetObjectsRecognized.json",
13 "annotations/3.2.5-notBodyBodyValue.json",
14 "annotations/3.2-bodyObjectsRecognized.json",
15 "annotations/3.2.5-bodyValueValidated.json",
16 "annotations/3.3.1-annotationCreatedValidated.json",
19 "annotations/3.3.6-annotationRightsValidated.json",
[all …]
H A DannotationsAgentOptionals.test10 "annotations/3.3.1-annotationCreatorImplemented.json",
11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json",
12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json",
15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json",
16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json",
19 "annotations/3.3.1-annotationGeneratorImplemented.json",
20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json",
21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json",
24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json",
28 "annotations/bodiesTargets/3.3.1-bodyCreator.json",
[all …]
/dports/mail/thunderbird/thunderbird-91.8.0/testing/web-platform/tests/annotation-model/annotations/
H A DannotationOptionals.test12 "annotations/3.2.5-bodyValueImplemented.json",
19 "annotations/3.3.7-annotationViaImplemented.json",
21 "annotations/3.1-bodyKeyFound.json",
28 "annotations/bodiesTargets/3.2.2-bodyType.json",
37 "annotations/bodiesTargets/3.3.7-bodyVia.json",
38 "annotations/bodiesTargets/3.2.1-bodyEWR.json",
39 "annotations/bodiesTargets/3.2.4-bodyETB.json",
49 "annotations/bodiesTargets/3.2.2-targType.json",
58 "annotations/bodiesTargets/3.3.7-targVia.json",
59 "annotations/bodiesTargets/3.2.1-targEWR.json",
[all …]
H A DannotationMusts.test8 "annotations/3.1-annotationContextValidated.json",
9 "annotations/3.1-annotationIdValidated.json",
10 "annotations/3.1-annotationTypeValidated.json",
11 "annotations/3.1-targetKeyFound.json",
12 "annotations/3.2-targetObjectsRecognized.json",
13 "annotations/3.2.5-notBodyBodyValue.json",
14 "annotations/3.2-bodyObjectsRecognized.json",
15 "annotations/3.2.5-bodyValueValidated.json",
16 "annotations/3.3.1-annotationCreatedValidated.json",
19 "annotations/3.3.6-annotationRightsValidated.json",
[all …]
H A DannotationsAgentOptionals.test10 "annotations/3.3.1-annotationCreatorImplemented.json",
11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json",
12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json",
15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json",
16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json",
19 "annotations/3.3.1-annotationGeneratorImplemented.json",
20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json",
21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json",
24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json",
28 "annotations/bodiesTargets/3.3.1-bodyCreator.json",
[all …]
/dports/lang/spidermonkey60/firefox-60.9.0/testing/web-platform/tests/annotation-model/annotations/
H A DannotationOptionals.test12 "annotations/3.2.5-bodyValueImplemented.json",
19 "annotations/3.3.7-annotationViaImplemented.json",
21 "annotations/3.1-bodyKeyFound.json",
28 "annotations/bodiesTargets/3.2.2-bodyType.json",
37 "annotations/bodiesTargets/3.3.7-bodyVia.json",
38 "annotations/bodiesTargets/3.2.1-bodyEWR.json",
39 "annotations/bodiesTargets/3.2.4-bodyETB.json",
49 "annotations/bodiesTargets/3.2.2-targType.json",
58 "annotations/bodiesTargets/3.3.7-targVia.json",
59 "annotations/bodiesTargets/3.2.1-targEWR.json",
[all …]
H A DannotationMusts.test8 "annotations/3.1-annotationContextValidated.json",
9 "annotations/3.1-annotationIdValidated.json",
10 "annotations/3.1-annotationTypeValidated.json",
11 "annotations/3.1-targetKeyFound.json",
12 "annotations/3.2-targetObjectsRecognized.json",
13 "annotations/3.2.5-notBodyBodyValue.json",
14 "annotations/3.2-bodyObjectsRecognized.json",
15 "annotations/3.2.5-bodyValueValidated.json",
16 "annotations/3.3.1-annotationCreatedValidated.json",
19 "annotations/3.3.6-annotationRightsValidated.json",
[all …]
H A DannotationsAgentOptionals.test10 "annotations/3.3.1-annotationCreatorImplemented.json",
11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json",
12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json",
15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json",
16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json",
19 "annotations/3.3.1-annotationGeneratorImplemented.json",
20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json",
21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json",
24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json",
28 "annotations/bodiesTargets/3.3.1-bodyCreator.json",
[all …]
/dports/lang/spidermonkey78/firefox-78.9.0/testing/web-platform/tests/annotation-model/annotations/
H A DannotationOptionals.test12 "annotations/3.2.5-bodyValueImplemented.json",
19 "annotations/3.3.7-annotationViaImplemented.json",
21 "annotations/3.1-bodyKeyFound.json",
28 "annotations/bodiesTargets/3.2.2-bodyType.json",
37 "annotations/bodiesTargets/3.3.7-bodyVia.json",
38 "annotations/bodiesTargets/3.2.1-bodyEWR.json",
39 "annotations/bodiesTargets/3.2.4-bodyETB.json",
49 "annotations/bodiesTargets/3.2.2-targType.json",
58 "annotations/bodiesTargets/3.3.7-targVia.json",
59 "annotations/bodiesTargets/3.2.1-targEWR.json",
[all …]
H A DannotationMusts.test8 "annotations/3.1-annotationContextValidated.json",
9 "annotations/3.1-annotationIdValidated.json",
10 "annotations/3.1-annotationTypeValidated.json",
11 "annotations/3.1-targetKeyFound.json",
12 "annotations/3.2-targetObjectsRecognized.json",
13 "annotations/3.2.5-notBodyBodyValue.json",
14 "annotations/3.2-bodyObjectsRecognized.json",
15 "annotations/3.2.5-bodyValueValidated.json",
16 "annotations/3.3.1-annotationCreatedValidated.json",
19 "annotations/3.3.6-annotationRightsValidated.json",
[all …]
H A DannotationsAgentOptionals.test10 "annotations/3.3.1-annotationCreatorImplemented.json",
11 "annotations/3.3.2-annotationCreatorAgentIdImplemented.json",
12 "annotations/3.3.2-annotationCreatorAgentTypeImplemented.json",
15 "annotations/3.3.2-annotationCreatorAgentNameImplemented.json",
16 "annotations/3.3.2-annotationCreatorAgentEmailImplemented.json",
19 "annotations/3.3.1-annotationGeneratorImplemented.json",
20 "annotations/3.3.2-annotationGeneratorAgentIdImplemented.json",
21 "annotations/3.3.2-annotationGeneratorAgentTypeImplemented.json",
24 "annotations/3.3.2-annotationGeneratorAgentNameImplemented.json",
28 "annotations/bodiesTargets/3.3.1-bodyCreator.json",
[all …]
/dports/biology/jalview/jalview/src/jalview/datamodel/
H A DAlignmentAnnotation.java338 this.annotations = annotations; in AlignmentAnnotation()
613 this.annotations = annotations; in AlignmentAnnotation()
627 if (annotations == null) in validateRangeAndDisplay()
816 if (annotations == null) in restrict()
833 if (annotations == null) in restrict()
864 annotations = temp; in restrict()
876 if (annotations == null) in padAnnotation()
884 System.arraycopy(annotations, 0, na, 0, annotations.length); in padAnnotation()
885 annotations = na; in padAnnotation()
1043 annotations = temp; in adjustForAlignment()
[all …]
/dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/tests/annotation/
H A Dtest_annotate_samples.py85 self.assertEqual(type(annotations), Table)
116 self.assertEqual(type(annotations), Table)
138 self.assertEqual(type(annotations), Table)
152 self.assertEqual(type(annotations), Table)
161 self.assertEqual(type(annotations), Table)
219 self.assertEqual(type(annotations), Table)
229 self.assertEqual(type(annotations), Table)
241 self.assertEqual(type(annotations), Table)
248 self.assertEqual(type(annotations), Table)
265 self.assertEqual(type(annotations), Table)
[all …]
/dports/devel/fbthrift/fbthrift-2021.12.27.00/thrift/compiler/test/fixtures/mcpp2-compare/gen-py3/module/
H A Dservices_reflection.pyx24 annotations={
33 annotations={
45 annotations={
58 annotations={
71 annotations={
84 annotations={
97 annotations={
110 annotations={
123 annotations={
136 annotations={
[all …]
/dports/devel/fbthrift/fbthrift-2021.12.27.00/thrift/compiler/test/fixtures/py3/gen-py3/module/
H A Dservices_reflection.pyx23 annotations={
35 annotations={
55 annotations={
68 annotations={
95 annotations={
115 annotations={
135 annotations={
155 annotations={
175 annotations={
846 annotations={
[all …]

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