Searched refs:cdslen (Results 1 – 2 of 2) sorted by relevance
728 Int4 cdslen; in GetProtRefDescr() local750 cdslen = objects::sequence::GetLength(feat.GetLocation(), &GetScope()); in GetProtRefDescr()780 diff_current = orglen - cdslen; in GetProtRefDescr()
3178 int cdslen = chain.FShiftedLen(chain.GetCdsInfo().Cds(),true); in MakeChains() local3180 … (cdslen < minscor.m_minlen || (chain.Score() < 2*minscor.m_min && cdslen < 2*minscor.m_cds_len))) in MakeChains()4131 int cdslen = algn.RealCdsLen(); in GoodCDNAScore() local4135 …5p_penalty*intron_5p+minscor.m_i3p_penalty*intron_3p-minscor.m_cds_bonus*cdslen+minscor.m_length_p… in GoodCDNAScore()