Searched refs:cdsmap (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/jalview/jalview/src/jalview/analysis/ |
| H A D | AlignmentUtils.java | 2115 Mapping cdsmap = new Mapping(cdsref.getMap().getTo(), in propagateDBRefsToCDS() local
2121 new Mapping(cdsmap.getTo(), cdsposmap)); in propagateDBRefsToCDS()
2126 if (cdsmap.getTo() == null && onSource != null) in propagateDBRefsToCDS()
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| /dports/biology/jalview/jalview/test/jalview/project/ |
| H A D | Jalview2xmlTests.java | 1214 Mapping cdsmap = new Mapping(cds, in testStoreAndRecoverGeneLocus() local
1217 DBRefEntry dbref2 = new DBRefEntry("EMBLCDS", "2", "X1235", cdsmap); in testStoreAndRecoverGeneLocus()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | chainer.cpp | 6565 CAlignMap cdsmap(a.GetAlignMap()); in InframeFraction() local
6572 … int len = cdsmap.FShiftedLen(cdsmap.ShrinkToRealPoints(TSignedSeqRange(prev,fs->Loc()-1)),false); in InframeFraction()
6586 int len = cdsmap.FShiftedLen(cdsmap.ShrinkToRealPoints(TSignedSeqRange(prev,right)),false); in InframeFraction()
6669 CAlignMap cdsmap(a.GetAlignMap()); in transform_align() local
6671 cdsmap.EditedSequence(seq, cds); in transform_align()
6685 TSignedSeqRange reading_frame = cdsmap.MapRangeEditedToOrig(TSignedSeqRange(3,length-4)); in transform_align()
6686 TSignedSeqRange start = cdsmap.MapRangeEditedToOrig(TSignedSeqRange(0,2)); in transform_align()
6687 TSignedSeqRange stop = cdsmap.MapRangeEditedToOrig(TSignedSeqRange(length-3,length-1)); in transform_align()
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