Searched refs:est_count (Results 1 – 5 of 5) sorted by relevance
/dports/sysutils/pacman/pacman-5.1.3/lib/libalpm/ |
H A D | be_local.c | 503 size_t est_count; in local_db_populate() local 533 est_count = buf.st_nlink; in local_db_populate() 539 est_count = 0; in local_db_populate() 541 est_count++; in local_db_populate() 545 if(est_count >= 2) { in local_db_populate() 547 est_count -= 2; in local_db_populate() 550 db->pkgcache = _alpm_pkghash_create(est_count); in local_db_populate()
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H A D | be_sync.c | 468 size_t est_count, count; in sync_db_populate() local 496 est_count = estimate_package_count(&buf, archive); in sync_db_populate() 501 est_count /= 4; in sync_db_populate() 504 db->pkgcache = _alpm_pkghash_create(est_count); in sync_db_populate()
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/dports/biology/hisat2/hisat2-2.2.1/ |
H A D | repeat_kmer.h | 209 size_t est_count = 0; in isRepeat() local 215 if(prev_in) est_count++; in isRepeat() 219 est_count++; in isRepeat() 232 bool est_repeat = est_count * 10 >= minimizers.size(); in isRepeat()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/data_loaders/csra/ |
H A D | csraloader_impl.cpp | 1441 Uint8 est_count = iter.GetEstimatedNumberOfAlignments(); in x_LoadRangesStat() local 1442 if ( est_count <= 2*kAlignChunkSize ) { in x_LoadRangesStat() 1446 …TSeqPos chunk_len = TSeqPos((double(ref_length)*kAlignChunkSize/est_count/segment_len+.5))*segment… in x_LoadRangesStat() 1454 " exp count: "<<est_count<<" chunks: "<<pp.size()); in x_LoadRangesStat()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | chainer.cpp | 167 map<TSignedSeqRange,int> est_count; member in CChainer::CChainerImpl 2584 …if(Include(ai_rf,intron) && Include(aj_rf,intron) && mrna_count[intron]+est_count[intron]+rnaseq_c… in LRCanChainItoJ() 2632 … if(Include(ai_rf,intron) && mrna_count[intron]+est_count[intron]+rnaseq_count[intron] == 0) { in LRIinit() 2824 …if(Include(ai_rf,intron) && Include(aj_rf,intron) && mrna_count[intron]+est_count[intron]+rnaseq_c… in RightLeft() 2908 …map<TSignedSeqRange,int>& mrna_count, map<TSignedSeqRange,int>& est_count, map<TSignedSeqRange,int… in GoodSupportForIntrons() argument 2922 …map<TSignedSeqRange,int>& mrna_count, map<TSignedSeqRange,int>& est_count, map<TSignedSeqRange,int… in MarkUnwantedLowSupportIntrons() argument 2925 …r_deletion = !GoodSupportForIntrons(*(*i)->m_align, minscor, mrna_count, est_count, rnaseq_count); in MarkUnwantedLowSupportIntrons() 3067 est_count[intron] += align.Weight(); in MakeChains() 3331 MarkUnwantedLowSupportIntrons(pointers, minscor, mrna_count, est_count, rnaseq_count); in MakeChains() 4000 … allcdnaintrons = (mrna_count[intron]+est_count[intron]+rnaseq_count[intron] > 0); in SetFlagsForChains() [all …]
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