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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/
H A DMultivariateGaussian.java57 for( int iii = 0; iii < mu.length; iii++ ) { in initializeRandomSigma()
141 for( int iii = 0; iii < mu.length; iii++ ) { in evaluateDatumLog10()
146 for( int iii = 0; iii < mu.length; iii++ ) { in evaluateDatumLog10()
147 sumKernel += crossProdTmp[iii] * (datum.annotations[iii] - mu[iii]); in evaluateDatumLog10()
178 for( int iii = 0; iii < mu.length; iii++ ) { in maximizeGaussian()
189 for( int iii = 0; iii < mu.length; iii++ ) { in maximizeGaussian()
190 double deltaMu = prob * (datum.annotations[iii]-mu[iii]); in maximizeGaussian()
201 for( int iii = 0; iii < mu.length; iii++ ) { in maximizeGaussian()
202 mu[iii] = (sumProb * mu[iii] + SHRINKAGE * empiricalMu[iii]) / (sumProb + SHRINKAGE); in maximizeGaussian()
229 for( int iii = 0; iii < mu.length; iii++ ) { in evaluateFinalModelParameters()
[all …]
/dports/misc/libemos/libemos-4.5.9-Source/tools/bufrtools_wmo/
H A Dtc_tracks_eps.F90241 iii=0
265 iii=iii+1
268 iii=iii+1
272 wind(number_of_members,iii),lat_wind(number_of_members,iii), &
283 pressure(number_of_members,iii)=pressure(number_of_members,iii)*100
358 if (is_missing_step(iii,1) == 0) values( n)=lat_pressure(iii,1)
360 if (is_missing_step(iii,1) == 0) values( n)=lon_pressure(iii,1)
362 if (is_missing_step(iii,1) == 0) values( n)=pressure(iii,1)
366 if (is_missing_step(iii,1) == 0) values( n)=lat_wind(iii,1)
368 if (is_missing_step(iii,1) == 0) values( n)=lon_wind(iii,1)
[all …]
/dports/graphics/py-pyproj/pyproj-3.2.1/pyproj/
H A Dlist.pyx12 cdef int iii = 0
14 while proj_operations[iii].id != NULL:
17 iii += 1
29 cdef int iii = 0
31 while proj_ellps[iii].id != NULL:
34 ellps_map[proj_ellps[iii].id] = {
39 iii += 1
51 cdef int iii = 0
53 while prime_meridians[iii].id != NULL:
55 prime_meridians[iii].defn
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H A D_geod.pyx111 cdef Py_ssize_t iii
113 for iii in range(lonbuff.len):
115 lon1 = lonbuff.data[iii]
117 az1 = azbuff.data[iii]
174 cdef Py_ssize_t iii
205 lon2buff.data[iii] = ps12
231 cdef Py_ssize_t iii
306 for iii in range(0, npts):
355 cdef Py_ssize_t iii
373 lonbuff.data[iii] = ps12
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/dports/multimedia/opentoonz/opentoonz-1.5.0/thirdparty/openblas/xianyi-OpenBLAS-e6e87a2/kernel/mips64/
H A Dzgemv_t_loongson3a.c46 …k] += A[jj + ii] * X[iii] - A[jj + ii + 1] * X[iii + 1]; Y[k + 1] += A[jj + ii] * X[iii + 1] + A[j…
47 …k] += A[jj + ii] * X[iii] + A[jj + ii + 1] * X[iii + 1]; Y[k + 1] += A[jj + ii] * X[iii + 1] - A[j…
48 …] += A[jj + ii] * X[iii] + A[jj + ii + 1] * X[iii + 1]; Y[k + 1] += -A[jj + ii] * X[iii + 1] + A[j…
49 …] += A[jj + ii] * X[iii] - A[jj + ii + 1] * X[iii + 1]; Y[k + 1] += -A[jj + ii] * X[iii + 1] - A[j…
51 …iii] - A[jj + ii + 1] * X[iii + 1]; iTmp = A[jj + ii] * X[iii + 1] + A[jj + ii + 1] * X[iii]; Y[k]…
52 …iii] + A[jj + ii + 1] * X[iii + 1]; iTmp = A[jj + ii] * X[iii + 1] - A[jj + ii + 1] * X[iii]; Y[k]…
53 …iii] + A[jj + ii + 1] * X[iii + 1]; iTmp = -A[jj + ii] * X[iii + 1] + A[jj + ii + 1] * X[iii]; Y[k…
54 …iii] - A[jj + ii + 1] * X[iii + 1]; iTmp = -A[jj + ii] * X[iii + 1] - A[jj + ii + 1] * X[iii]; Y[k…
82 BLASLONG i = 0, ii = 0, iii = 0; in CNAME() local
85 prefetch(X[iii + fahead]); in CNAME()
[all …]
/dports/math/openblas/OpenBLAS-0.3.18/kernel/mips64/
H A Dzgemv_t_loongson3a.c46 …k] += A[jj + ii] * X[iii] - A[jj + ii + 1] * X[iii + 1]; Y[k + 1] += A[jj + ii] * X[iii + 1] + A[j…
47 …k] += A[jj + ii] * X[iii] + A[jj + ii + 1] * X[iii + 1]; Y[k + 1] += A[jj + ii] * X[iii + 1] - A[j…
48 …] += A[jj + ii] * X[iii] + A[jj + ii + 1] * X[iii + 1]; Y[k + 1] += -A[jj + ii] * X[iii + 1] + A[j…
49 …] += A[jj + ii] * X[iii] - A[jj + ii + 1] * X[iii + 1]; Y[k + 1] += -A[jj + ii] * X[iii + 1] - A[j…
51 …iii] - A[jj + ii + 1] * X[iii + 1]; iTmp = A[jj + ii] * X[iii + 1] + A[jj + ii + 1] * X[iii]; Y[k]…
52 …iii] + A[jj + ii + 1] * X[iii + 1]; iTmp = A[jj + ii] * X[iii + 1] - A[jj + ii + 1] * X[iii]; Y[k]…
53 …iii] + A[jj + ii + 1] * X[iii + 1]; iTmp = -A[jj + ii] * X[iii + 1] + A[jj + ii + 1] * X[iii]; Y[k…
54 …iii] - A[jj + ii + 1] * X[iii + 1]; iTmp = -A[jj + ii] * X[iii + 1] - A[jj + ii + 1] * X[iii]; Y[k…
82 BLASLONG i = 0, ii = 0, iii = 0; in CNAME() local
85 prefetch(X[iii + fahead]); in CNAME()
[all …]
/dports/graphics/pcl-pointclouds/pcl-pcl-1.12.0/filters/include/pcl/filters/impl/
H A Dstatistical_outlier_removal.hpp71 …for (int iii = 0; iii < static_cast<int> (indices_->size ()); ++iii) // iii = input indices itera… in applyFilterIndices() local
73 if (!std::isfinite ((*input_)[(*indices_)[iii]].x) || in applyFilterIndices()
74 !std::isfinite ((*input_)[(*indices_)[iii]].y) || in applyFilterIndices()
75 !std::isfinite ((*input_)[(*indices_)[iii]].z)) in applyFilterIndices()
77 distances[iii] = 0.0; in applyFilterIndices()
84 distances[iii] = 0.0; in applyFilterIndices()
93 distances[iii] = static_cast<float> (dist_sum / mean_k_); in applyFilterIndices()
112 …for (int iii = 0; iii < static_cast<int> (indices_->size ()); ++iii) // iii = input indices itera… in applyFilterIndices() local
116 …if ((!negative_ && distances[iii] > distance_threshold) || (negative_ && distances[iii] <= distanc… in applyFilterIndices()
119 (*removed_indices_)[rii++] = (*indices_)[iii]; in applyFilterIndices()
[all …]
H A Dlocal_maximum.hpp113 for (const auto& iii : (*indices_)) in applyFilterIndices()
115 if (!isFinite ((*input_)[iii])) in applyFilterIndices()
122 if (point_is_visited[iii] && !point_is_max[iii]) in applyFilterIndices()
128 point_is_max[iii] = true; in applyFilterIndices()
129 point_is_visited[iii] = true; in applyFilterIndices()
144 point_is_max[iii] = false; in applyFilterIndices()
148 float query_z = (*input_)[iii].z; in applyFilterIndices()
154 point_is_max[iii] = false; in applyFilterIndices()
161 if (point_is_max[iii]) in applyFilterIndices()
171 if ((!negative_ && point_is_max[iii]) || (negative_ && !point_is_max[iii])) in applyFilterIndices()
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/dports/textproc/miller/miller-5.10.2/go/reg-test/expected/
H A Dcase-verb-unsparsify.sh.out45 a b iii x y nonesuch
74 a b iii x y i
97 a b i xxx y aaa bbb iii yyy
106 a b i x yyy aaa bbb xxx iii
109 aaa bbb i x y xxx iii yyy
203 a b iii x y i
232 a b iii x y i
264 a b i x yyy aaa bbb iii xxx
267 aaa bbb i x y iii xxx yyy
293 a b i x yyy aaa bbb iii xxx
[all …]
/dports/graphics/rgbpaint/rgbpaint-0.8.7/po/
H A DMakefile6 for iii in $(langs); do echo -n "$$iii = "; msgfmt -v -o $$iii.mo $$iii.po; done
9 for iii in $(langs); do mkdir -p $(DESTDIR)$(MT_LANG_DEST)/$$iii/LC_MESSAGES/; done
10 for iii in $(langs); do cp $$iii.mo $(DESTDIR)$(MT_LANG_DEST)/$$iii/LC_MESSAGES/rgbpaint.mo; done
13 for iii in $(langs); do rm $(DESTDIR)$(MT_LANG_DEST)/$$iii/LC_MESSAGES/rgbpaint.mo; done
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/recalibration/
H A DBaseRecalibrationEngineUnitTest.java32 for( int iii = 0; iii < answer.length; iii++) { in basicDBQSRFractionalErrorTestEnd()
33 Assert.assertEquals(result[iii], answer[iii], 1E-6); in basicDBQSRFractionalErrorTestEnd()
47 for( int iii = 0; iii < answer.length; iii++) { in basicDBQSRFractionalErrorTestStart()
48 Assert.assertEquals(result[iii], answer[iii], 1E-6); in basicDBQSRFractionalErrorTestStart()
62 for( int iii = 0; iii < answer.length; iii++) { in basicDBQSRFractionalErrorTestNoBAQ()
63 Assert.assertEquals(result[iii], answer[iii], 1E-6); in basicDBQSRFractionalErrorTestNoBAQ()
77 for( int iii = 0; iii < answer.length; iii++) { in basicDBQSRFractionalErrorTestBAQOffset()
78 Assert.assertEquals(result[iii], answer[iii], 1E-6); in basicDBQSRFractionalErrorTestBAQOffset()
92 for( int iii = 0; iii < answer.length; iii++) { in basicDBQSRFractionalErrorTestMiddle()
93 Assert.assertEquals(result[iii], answer[iii], 1E-6); in basicDBQSRFractionalErrorTestMiddle()
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/smd/graveyard/smd-serial/
H A Dfrce_shrt.f5 SUBROUTINE frce_shrt(iii,ntype,rij,rijsq,jbeg,jend,evdw) argument
17 integer iii,i,j,k,l local
38 imin=min(atmtype(iii),atmtype(j))
39 imax=max(atmtype(iii),atmtype(j))
56 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
57 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
58 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
75 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
76 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
77 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/smd/graveyard/smd-subgroups/
H A Dfrce_shrt.f5 SUBROUTINE frce_shrt(iii,ntype,rij,rijsq,jbeg,jend,evdw) argument
17 integer iii,i,j,k,l local
37 imin=min(atmtype(iii),atmtype(j))
38 imax=max(atmtype(iii),atmtype(j))
55 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
56 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
57 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
74 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
75 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
76 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/smd/graveyard/smd-9-10-08/
H A Dfrce_shrt.f5 SUBROUTINE frce_shrt(iii,ntype,rij,rijsq,jbeg,jend,evdw) argument
17 integer iii,i,j,k,l local
38 imin=min(atmtype(iii),atmtype(j))
39 imax=max(atmtype(iii),atmtype(j))
56 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
57 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
58 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
75 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
76 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
77 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
/dports/science/nwchem-data/nwchem-7.0.2-release/src/smd/graveyard/smd-serial/
H A Dfrce_shrt.f5 SUBROUTINE frce_shrt(iii,ntype,rij,rijsq,jbeg,jend,evdw) argument
17 integer iii,i,j,k,l local
38 imin=min(atmtype(iii),atmtype(j))
39 imax=max(atmtype(iii),atmtype(j))
56 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
57 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
58 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
75 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
76 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
77 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
/dports/science/nwchem-data/nwchem-7.0.2-release/src/smd/graveyard/smd-subgroups/
H A Dfrce_shrt.f5 SUBROUTINE frce_shrt(iii,ntype,rij,rijsq,jbeg,jend,evdw) argument
17 integer iii,i,j,k,l local
37 imin=min(atmtype(iii),atmtype(j))
38 imax=max(atmtype(iii),atmtype(j))
55 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
56 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
57 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
74 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
75 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
76 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
/dports/science/nwchem-data/nwchem-7.0.2-release/src/smd/graveyard/smd-9-10-08/
H A Dfrce_shrt.f5 SUBROUTINE frce_shrt(iii,ntype,rij,rijsq,jbeg,jend,evdw) argument
17 integer iii,i,j,k,l local
38 imin=min(atmtype(iii),atmtype(j))
39 imax=max(atmtype(iii),atmtype(j))
56 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
57 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
58 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
75 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
76 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
77 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
/dports/graphics/mtpaint/mtPaint-4ea607e/po/
H A DMakefile6 for iii in $(langs); do echo -n "$$iii = "; msgfmt -v -o $$iii.mo $$iii.po; done
9 for iii in $(langs); do mkdir -p $(DESTDIR)$(MT_LANG_DEST)/$$iii/LC_MESSAGES/; done
10 for iii in $(langs); do cp $$iii.mo $(DESTDIR)$(MT_LANG_DEST)/$$iii/LC_MESSAGES/mtpaint.mo; done
13 for iii in $(langs); do rm $(DESTDIR)$(MT_LANG_DEST)/$$iii/LC_MESSAGES/mtpaint.mo; done
/dports/net-mgmt/bpft/bpft/
H A DMakefile111 …${DESTDIR}${PREFIX_MANPAGES}1/$${iii}.1 ; gzip <$${iii}/$${iii}.1 >$${iii}/$${iii}.1.gz ; ${INSTAL…
113 …${DESTDIR}${PREFIX_MANPAGES}8/$${iii}.8 ; gzip <$${iii}/$${iii}.8 >$${iii}/$${iii}.8.gz ; ${INSTAL…
145 …PAGES_1}; do rm ${DESTDIR}${PREFIX_MANPAGES}1/$${iii}.1.gz ; rm ${DESTDIR}${PREFIX_CATMANPAGES}1/$…
146 …PAGES_8}; do rm ${DESTDIR}${PREFIX_MANPAGES}8/$${iii}.8.gz ; rm ${DESTDIR}${PREFIX_CATMANPAGES}8/$…
H A DMakefile.linux122 …; do echo ${PREFIX_MANPAGES}1/$${iii}.1 ; gzip <$${iii}/$${iii}.1 >$${iii}/$${iii}.1.gz ; ${INSTAL…
123 …; do echo ${PREFIX_MANPAGES}8/$${iii}.8 ; gzip <$${iii}/$${iii}.8 >$${iii}/$${iii}.8.gz ; ${INSTAL…
155 @-for iii in ${MANPAGES_1}; do rm ${PREFIX_MANPAGES}1/$${iii}.1.gz ; done
156 @-for iii in ${MANPAGES_8}; do rm ${PREFIX_MANPAGES}8/$${iii}.8.gz ; done
/dports/science/nwchem/nwchem-7b21660b82ebd85ef659f6fba7e1e73433b0bd0a/src/smd/graveyard/smd-original/
H A Dfrce_shrt.f1 SUBROUTINE frce_shrt(iii,ntype,rij,rijsq,jbeg,jend,evdw) argument
13 integer iii,i,j,k,l local
35 imin=min(atmtype(iii),atmtype(j))
36 imax=max(atmtype(iii),atmtype(j))
57 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
58 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
59 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
76 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
77 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
78 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
/dports/science/nwchem-data/nwchem-7.0.2-release/src/smd/graveyard/smd-original/
H A Dfrce_shrt.f1 SUBROUTINE frce_shrt(iii,ntype,rij,rijsq,jbeg,jend,evdw) argument
13 integer iii,i,j,k,l local
35 imin=min(atmtype(iii),atmtype(j))
36 imax=max(atmtype(iii),atmtype(j))
57 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
58 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
59 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
76 fff(iii,1)=fff(iii,1)+convfct2*force*rij(k,1)
77 fff(iii,2)=fff(iii,2)+convfct2*force*rij(k,2)
78 fff(iii,3)=fff(iii,3)+convfct2*force*rij(k,3)
/dports/science/frontistr/FrontISTR-c66bdc397de319ca59a0565b3f3b1a3b33f0c50c/hecmw1/src/visualizer/
H A Dhecmw_vis_rendering.c193 for (iii = 0; iii < sf[0].surface_style; iii++) { in HECMW_vis_rendering_surface()
199 sf[iii + 1].disp_scale = sf[iii + 1].real_disp_scale; in HECMW_vis_rendering_surface()
670 for (iii = 0; iii < sf[0].surface_style; iii++) { in HECMW_vis_rendering_surface()
730 result[iii].color[result[iii].patch[k * 3 + i] - 1]; in HECMW_vis_rendering_surface()
885 result[iii].color[result[iii].patch[k * 3 + i] - 1]; in HECMW_vis_rendering_surface()
955 result[iii].color[result[iii].patch[k * 3 + i] - 1]; in HECMW_vis_rendering_surface()
1195 result[iii].color[result[iii].patch[k * 3 + i] - 1]; in HECMW_vis_rendering_surface()
1429 if ((sf[iii + 1].surface_style == 3) && (sf[iii + 1].coef[0] == 0) && in HECMW_vis_rendering_surface()
1430 (sf[iii + 1].coef[1] == 0) && (sf[iii + 1].coef[2] == 0) && in HECMW_vis_rendering_surface()
1431 (sf[iii + 1].coef[3] == 0) && (sf[iii + 1].coef[4] == 0) && in HECMW_vis_rendering_surface()
[all …]
/dports/math/R-cran-VGAM/VGAM/src/
H A Drgam.f218 yw1(iii) = g9fvdrbw(iii,3)
224 yw2(iii) = g9fvdrbw(iii,3) - yw1(iii)
230 yq6lorbx = iii
233 *yq6lorbx) + (yw2(iii)*yw1(yq6lorbx) + yw2(yq6lorbx)*yw1(iii))*0.50
238 *q6lorbx) + (yw2(iii)*yw1(yq6lorbx) + yw2(yq6lorbx)*yw1(iii))*0.50
244 *q6lorbx) + (yw2(iii)*yw1(yq6lorbx) + yw2(yq6lorbx)*yw1(iii))*0.50
250 *q6lorbx) + (yw2(iii)*yw1(yq6lorbx) + yw2(yq6lorbx)*yw1(iii))*0.50
258 yq6lorbx = iii
261 *q6lorbx) + (yw2(iii)*yw1(yq6lorbx) + yw2(yq6lorbx)*yw1(iii))*0.50
280 yq6lorbx = iii
[all …]
/dports/devel/llvm70/llvm-7.0.1.src/tools/clang/include/clang/Basic/
H A DBuiltinsARM.def29 BUILTIN(__builtin_arm_smulbb, "iii", "nc")
30 BUILTIN(__builtin_arm_smulbt, "iii", "nc")
31 BUILTIN(__builtin_arm_smultb, "iii", "nc")
32 BUILTIN(__builtin_arm_smultt, "iii", "nc")
33 BUILTIN(__builtin_arm_smulwb, "iii", "nc")
34 BUILTIN(__builtin_arm_smulwt, "iii", "nc")
37 BUILTIN(__builtin_arm_qadd, "iii", "nc")
38 BUILTIN(__builtin_arm_qsub, "iii", "nc")
58 BUILTIN(__builtin_arm_sel, "iii", "nc")
79 BUILTIN(__builtin_arm_qasx, "iii", "nc")
[all …]

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