Searched refs:kalign (Results 1 – 13 of 13) sorted by relevance
7 workflow align-kalign{16 kalign {17 type:kalign;28 read-msa.out-msa->kalign.in-msa29 kalign.out-msa->write-msa.in-msa32 read-msa.msa->kalign.in-msa.msa33 kalign.msa->write-msa.in-msa.msa41 kalign.bonus-score {45 kalign.gap-ext-penalty {49 kalign.gap-open-penalty {[all …]
1 include (kalign.pri)61 RESOURCES += kalign.qrc
2 <qresource prefix="kalign/" >
1 PLUGIN_ID=kalign
23 is($version >= 2, 1, "Code tested only on kalign versions >= 2" );
36 src/plugins_3rdparty/kalign \
88 # Runnables / UGENE / plugins_3rdparty / kalign93 src/runnables/ugene/plugins_3rdparty/kalign/KalignDialogFiller.h \370 # Runnables / UGENE / plugins_3rdparty / kalign375 src/runnables/ugene/plugins_3rdparty/kalign/KalignDialogFiller.cpp \
128 kalign = built-in, 1
2653 auto& kalign = *pointers[k]->m_align; in LeftRight() local2654 int rend = kalign.Limits().GetTo(); in LeftRight()2655 if(kalign.Status()&CGeneModel::eRightFlexible) in LeftRight()2656 rend = kalign.Limits().GetFrom(); in LeftRight()2712 auto& kalign = *pointers[k]->m_align; in RightLeft() local2713 int lend = kalign.Limits().GetFrom(); in RightLeft()2714 if(kalign.Status()&CGeneModel::eRightFlexible) in RightLeft()2715 lend = kalign.Limits().GetTo(); in RightLeft()
4646 double kalign = 0., malign = 0.; in pair_add() local4688 kalign = .5; in pair_add()4699 kalign = .5; in pair_add()4704 align = lives_alignment_new(kalign, .5, 1., 0.); in pair_add()
12561 kalign#1:2.03+20110620-212562 kalign#1:2.03+20110620-2
21144 - amd64 | kalign | 1:2.03+20110620-2 | - …42099 - i386 | kalign | 1:2.03+20110620-2 | - …