Searched refs:limits_on_mrna (Results 1 – 2 of 2) sorted by relevance
117 …CRef<CSeq_loc> create_packed_int_seqloc(const CGeneModel& model, TSignedSeqRange limits_on_mrna = …353 …plementationData::create_packed_int_seqloc(const CGeneModel& model, TSignedSeqRange limits_on_mrna) in create_packed_int_seqloc() argument365 … TSignedSeqRange interval_range_on_mrna = amap.MapRangeOrigToEdited(e->Limits()) & limits_on_mrna; in create_packed_int_seqloc()369 bool extends_to_left = interval_range_on_mrna.GetFrom() > limits_on_mrna.GetFrom(); in create_packed_int_seqloc()370 bool extends_to_right = interval_range_on_mrna.GetTo() < limits_on_mrna.GetTo(); in create_packed_int_seqloc()
4866 TSignedSeqRange limits_on_mrna = GetAlignMap().MapRangeOrigToEdited(limits,false); in ClipChain() local4867 _ASSERT(limits_on_mrna.NotEmpty()); in ClipChain()4889 if(limits_on_mrna.GetFrom() > 0) in ClipChain()4890 m_coverage.erase(m_coverage.begin(),m_coverage.begin()+limits_on_mrna.GetFrom()); in ClipChain()4891 m_coverage.resize(limits_on_mrna.GetLength()); in ClipChain()