| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/ |
| H A D | alnmapprint.cpp | 49 m_Out(&out) in CAlnMapPrinter()
67 m_Out->width(m_IdFieldLen); in PrintId()
69 *m_Out << GetId(row); in PrintId()
77 m_Out->width(m_RowFieldLen); in PrintNumRow()
79 *m_Out << row; in PrintNumRow()
88 *m_Out << pos; in PrintSeqPos()
95 *m_Out << delim; in CsvTable()
99 *m_Out << endl; in CsvTable()
109 *m_Out << endl; in CsvTable()
151 *m_Out << NcbiEndl; in Segments()
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| H A D | alnvecprint.cpp | 155 *m_Out << buffer[row].substr(pos, scrn_width) in PopsetStyle()
161 *m_Out << endl; in PopsetStyle()
192 *m_Out << endl; in PopsetStyle()
235 *m_Out << endl; in PopsetStyle()
334 m_Out->width(m_IdFieldLen); in ClustalStyle()
335 *m_Out << ""; in ClustalStyle()
383 m_Out->width(m_IdFieldLen); in ClustalStyle()
384 *m_Out << ""; in ClustalStyle()
385 *m_Out << identities_str in ClustalStyle()
428 m_Out->width(m_IdFieldLen); in ClustalStyle()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/alnmgr/ |
| H A D | alnmapprint.cpp | 49 m_Out(&out) in CAlnMapPrinter()
67 m_Out->width(m_IdFieldLen); in PrintId()
69 *m_Out << GetId(row); in PrintId()
77 m_Out->width(m_RowFieldLen); in PrintNumRow()
79 *m_Out << row; in PrintNumRow()
88 *m_Out << pos; in PrintSeqPos()
95 *m_Out << delim; in CsvTable()
99 *m_Out << endl; in CsvTable()
109 *m_Out << endl; in CsvTable()
151 *m_Out << NcbiEndl; in Segments()
[all …]
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| H A D | alnvecprint.cpp | 155 *m_Out << buffer[row].substr(pos, scrn_width) in PopsetStyle()
161 *m_Out << endl; in PopsetStyle()
192 *m_Out << endl; in PopsetStyle()
235 *m_Out << endl; in PopsetStyle()
334 m_Out->width(m_IdFieldLen); in ClustalStyle()
335 *m_Out << ""; in ClustalStyle()
383 m_Out->width(m_IdFieldLen); in ClustalStyle()
384 *m_Out << ""; in ClustalStyle()
385 *m_Out << identities_str in ClustalStyle()
428 m_Out->width(m_IdFieldLen); in ClustalStyle()
[all …]
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| /dports/graphics/digikam/digikam-7.4.0/core/dplugins/generic/tools/mediaserver/upnpsdk/Neptune/Source/Core/ |
| H A D | NptRingBuffer.cpp | 81 (m_In < m_Out) ? in GetContiguousSpace()
95 (m_In < m_Out) ? in GetSpace()
109 if (m_In < m_Out) { in Write()
141 (m_Out <= m_In) ? in GetContiguousAvailable()
167 if (m_In > m_Out) { in Read()
170 if (m_Out == m_Data.end) m_Out = m_Data.start; in Read()
176 m_Out += chunk; in Read()
177 if (m_Out == m_Data.end) m_Out = m_Data.start; in Read()
183 if (m_Out == m_Data.end) m_Out = m_Data.start; in Read()
197 if (m_Out == m_Data.end) m_Out = m_Data.start; in ReadByte()
[all …]
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| /dports/multimedia/kodi/xbmc-19.3-Matrix/lib/libUPnP/Neptune/Source/Core/ |
| H A D | NptRingBuffer.cpp | 81 (m_In < m_Out) ? in GetContiguousSpace()
95 (m_In < m_Out) ? in GetSpace()
109 if (m_In < m_Out) { in Write()
167 if (m_In > m_Out) { in Read()
170 if (m_Out == m_Data.end) m_Out = m_Data.start; in Read()
176 m_Out += chunk; in Read()
177 if (m_Out == m_Data.end) m_Out = m_Data.start; in Read()
183 if (m_Out == m_Data.end) m_Out = m_Data.start; in Read()
197 if (m_Out == m_Data.end) m_Out = m_Data.start; in ReadByte()
209 where = m_Out+offset; in PeekByte()
[all …]
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| /dports/multimedia/Bento4/Bento4-1.6.0-639/Source/C++/Codecs/ |
| H A D | Ap4BitStream.cpp | 64 m_Out = 0; in Reset()
91 (m_In < m_Out) ? in GetContiguousBytesFree()
92 (m_Out - m_In - 1) : in GetContiguousBytesFree()
104 (m_In < m_Out) ? in GetBytesFree()
126 if (m_In < m_Out) { in WriteBytes()
153 (m_Out <= m_In) ? in GetContiguousBytesAvailable()
154 (m_In - m_Out) : in GetContiguousBytesAvailable()
165 (m_Out <= m_In) ? in GetBytesAvailable()
166 (m_In - m_Out) : in GetBytesAvailable()
191 if (m_Out < m_In) { in ReadBytes()
[all …]
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| H A D | Ap4BitStream.h | 94 unsigned int m_Out; variable
124 unsigned int pos = m_Out; in ReadCache()
166 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in ReadBits()
194 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in ReadBit()
256 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in SkipBits()
262 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in SkipBits()
278 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in SkipBit()
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| /dports/multimedia/kodi-addon-inputstream.adaptive/inputstream.adaptive-19.0.1-Matrix/lib/libbento4/Codecs/ |
| H A D | Ap4BitStream.cpp | 64 m_Out = 0; in Reset()
91 (m_In < m_Out) ? in GetContiguousBytesFree()
92 (m_Out - m_In - 1) : in GetContiguousBytesFree()
104 (m_In < m_Out) ? in GetBytesFree()
126 if (m_In < m_Out) { in WriteBytes()
153 (m_Out <= m_In) ? in GetContiguousBytesAvailable()
154 (m_In - m_Out) : in GetContiguousBytesAvailable()
165 (m_Out <= m_In) ? in GetBytesAvailable()
166 (m_In - m_Out) : in GetBytesAvailable()
191 if (m_Out < m_In) { in ReadBytes()
[all …]
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| H A D | Ap4BitStream.h | 94 unsigned int m_Out; variable
124 unsigned int pos = m_Out; in ReadCache()
166 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in ReadBits()
194 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in ReadBit()
256 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in SkipBits()
262 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in SkipBits()
278 m_Out = AP4_BITSTREAM_POINTER_OFFSET(m_Out, AP4_WORD_BYTES); in SkipBit()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/id1/test/ |
| H A D | test_id1_client.cpp | 62 CNcbiOstream* m_Out; member in CTestID1ClientApp
93 m_Out = &args["out"].AsOutputFile(); in Run()
98 *m_Out << "-- " << flush; in Run()
110 *m_Out << endl; in Run()
124 *m_Out << "commands:" << endl; in RunCommand()
125 *m_Out << " connect" << endl; in RunCommand()
126 *m_Out << " disconnect" << endl; in RunCommand()
127 *m_Out << " quit, exit" << endl; in RunCommand()
128 *m_Out << " reconnect" << endl; in RunCommand()
129 *m_Out << " getgi <accession>" << endl; in RunCommand()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/blast/blastdb_format/ |
| H A D | seq_formatter.cpp | 168 m_Out << m_Seperators[i]; in x_Print()
172 m_Out << other_fields[e_seq]; in x_Print()
188 m_Out << NStr::NumericToString(oid); in x_Print()
196 m_Out << other_fields[e_hash]; in x_Print()
240 m_Out << other_fields[e_mask]; in x_Print()
261 m_Out << m_Seperators.back(); in x_Print()
262 m_Out << endl; in x_Print()
338 m_Out << MSerial_AsnText << *df_set; in Write()
483 m_Out << fasta_deflines; in Write()
510 : m_BlastDb(blastdb), m_Out(out) in CBlastDB_BioseqFormatter()
[all …]
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| H A D | seq_writer.cpp | 223 m_Out << m_DataExtractor.ExtractFasta(id); in Write()
231 m_Out << x_Replacer(data2write) << endl; in Write()
272 CFastaOstream fasta(m_Out); in DumpAll()
315 m_Out << '>'; in DumpAll()
317 m_Out << GetBareId(*id); in DumpAll()
322 m_Out << ' '; in DumpAll()
329 m_Out << *it; in DumpAll()
340 m_Out << " >" << *it; in DumpAll()
343 m_Out << separator; in DumpAll()
345 m_Out << GetBareId(*id); in DumpAll()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/blast/blastdb_format/ |
| H A D | seq_formatter.cpp | 168 m_Out << m_Seperators[i]; in x_Print()
172 m_Out << other_fields[e_seq]; in x_Print()
188 m_Out << NStr::NumericToString(oid); in x_Print()
196 m_Out << other_fields[e_hash]; in x_Print()
240 m_Out << other_fields[e_mask]; in x_Print()
261 m_Out << m_Seperators.back(); in x_Print()
262 m_Out << endl; in x_Print()
338 m_Out << MSerial_AsnText << *df_set; in Write()
483 m_Out << fasta_deflines; in Write()
510 : m_BlastDb(blastdb), m_Out(out) in CBlastDB_BioseqFormatter()
[all …]
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| H A D | seq_writer.cpp | 223 m_Out << m_DataExtractor.ExtractFasta(id); in Write()
231 m_Out << x_Replacer(data2write) << endl; in Write()
272 CFastaOstream fasta(m_Out); in DumpAll()
315 m_Out << '>'; in DumpAll()
317 m_Out << GetBareId(*id); in DumpAll()
322 m_Out << ' '; in DumpAll()
329 m_Out << *it; in DumpAll()
340 m_Out << " >" << *it; in DumpAll()
343 m_Out << separator; in DumpAll()
345 m_Out << GetBareId(*id); in DumpAll()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/corelib/ |
| H A D | ddumpable.cpp | 289 : m_Out(out) in CDebugDumpFormatterText()
303 m_Out << endl; in StartBundle()
316 m_Out << endl; in EndBundle()
318 m_Out << endl; in EndBundle()
320 m_Out << "}"; in EndBundle()
328 m_Out << endl; in StartFrame()
338 m_Out << " }"; in EndFrame()
346 m_Out << endl; in PutValue()
353 m_Out << value; in PutValue()
372 m_Out << endl; in x_InsertPageBreak()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/corelib/ |
| H A D | ddumpable.cpp | 289 : m_Out(out) in CDebugDumpFormatterText()
303 m_Out << endl; in StartBundle()
316 m_Out << endl; in EndBundle()
318 m_Out << endl; in EndBundle()
320 m_Out << "}"; in EndBundle()
328 m_Out << endl; in StartFrame()
338 m_Out << " }"; in EndFrame()
346 m_Out << endl; in PutValue()
353 m_Out << value; in PutValue()
372 m_Out << endl; in x_InsertPageBreak()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | sam_formatter.cpp | 304 : m_Out(&out), in CSAM_Formatter()
363 *m_Out << "\tSO:unsorted"; in x_PrintSOTag()
366 *m_Out << "\tSO:queryname"; in x_PrintSOTag()
386 *m_Out << "\tGO:none"; in x_PrintGOTag()
389 *m_Out << "\tGO:query"; in x_PrintGOTag()
392 *m_Out << "\tGO:reference"; in x_PrintGOTag()
407 if ( !m_Out ) return; in Flush()
411 *m_Out << "@HD\tVN:1.2"; in Flush()
414 *m_Out << '\n'; in Flush()
433 *m_Out << '\n'; in Flush()
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
| H A D | sam_formatter.cpp | 304 : m_Out(&out), in CSAM_Formatter()
363 *m_Out << "\tSO:unsorted"; in x_PrintSOTag()
366 *m_Out << "\tSO:queryname"; in x_PrintSOTag()
386 *m_Out << "\tGO:none"; in x_PrintGOTag()
389 *m_Out << "\tGO:query"; in x_PrintGOTag()
392 *m_Out << "\tGO:reference"; in x_PrintGOTag()
407 if ( !m_Out ) return; in Flush()
411 *m_Out << "@HD\tVN:1.2"; in Flush()
414 *m_Out << '\n'; in Flush()
433 *m_Out << '\n'; in Flush()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/ctools/asn/ |
| H A D | asnwrite.cpp | 40 : m_Out(0), m_Mode(ASNIO_TEXT) in CAsnWriteNode()
45 : m_Out(0), m_Mode(mode) in CAsnWriteNode()
51 AsnIoClose(m_Out); in ~CAsnWriteNode()
67 AsnIoPtr out = m_Out; in GetOut()
69 out = m_Out = AsnIoNew(m_Mode | ASNIO_OUT, 0, this, in GetOut()
77 AsnIoFlush(m_Out); in PrintChildren()
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| /dports/devel/codeblocks/codeblocks-20.03/src/plugins/contrib/HexEditor/ |
| H A D | TestCasesBase.h | 40 TestCasesBase(): m_Out( 0 ) {} in TestCasesBase()
43 inline void InitOutput( Output& out ) { m_Out = &out; } in InitOutput()
54 inline void AddLog( const wxString& logLine ) { m_Out->AddLog( logLine ); } in AddLog()
57 inline bool StopTest() { return m_Out->StopTest(); } in StopTest()
61 Output* m_Out; ///< \brief structure gathering the output
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blastdb/ |
| H A D | blastdbcheck.cpp | 896 : m_Out (outp), in CTestData()
965 m_Out.Log(e_Summary) in Test()
986 m_Out.Log(e_Summary) in Test()
990 m_Out.Log(e_Summary) in Test()
998 m_Out.Log(e_Summary) in Test()
1010 m_Out.Log(e_Summary) in Test()
1014 m_Out.Log(e_Summary) in Test()
1079 m_Out.Log(e_Summary) in Test()
1093 m_Out.Log(e_Summary) in Test()
1131 m_Out.Log(e_Summary) in Test()
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blastdb/ |
| H A D | blastdbcheck.cpp | 896 : m_Out (outp), in CTestData()
965 m_Out.Log(e_Summary) in Test()
986 m_Out.Log(e_Summary) in Test()
990 m_Out.Log(e_Summary) in Test()
998 m_Out.Log(e_Summary) in Test()
1010 m_Out.Log(e_Summary) in Test()
1014 m_Out.Log(e_Summary) in Test()
1079 m_Out.Log(e_Summary) in Test()
1093 m_Out.Log(e_Summary) in Test()
1131 m_Out.Log(e_Summary) in Test()
[all …]
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| /dports/lang/intel-compute-runtime/compute-runtime-21.52.22081/shared/source/os_interface/windows/ |
| H A D | device_time_gpu_cpu_wddm.cpp | 26 hwInfoConfig->convertTimestampsFromOaToCsDomain(escapeInfo.m_Data.m_Out.gpuPerfTicks); in getCpuGpuTime()
27 double cpuNanoseconds = escapeInfo.m_Data.m_Out.cpuPerfTicks * in getCpuGpuTime()
28 (1000000000.0 / escapeInfo.m_Data.m_Out.cpuPerfFreq); in getCpuGpuTime()
31 pGpuCpuTime->GPUTimeStamp = (unsigned long long)escapeInfo.m_Data.m_Out.gpuPerfTicks; in getCpuGpuTime()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/test/ |
| H A D | test_basic_cleanup.cpp | 105 auto_ptr<CObjectOStream> m_Out; member in CTest_cleanupApplication
186 m_Out.reset(output_files[file_index]); in Run()
312 *m_Out << (*seh.GetCompleteSeq_entry()); in ProcessSeqEntry()
317 *m_Out << (*se); in ProcessSeqEntry()
340 *m_Out << (*ss); in ProcessSeqSubmit()
364 *m_Out << (*sa); in ProcessSeqAnnot()
392 *m_Out << (*sfh.GetSeq_feat()); in ProcessSeqFeat()
396 *m_Out << (*sf); in ProcessSeqFeat()
416 *m_Out << (*bsh.GetCompleteBioseq()); in ProcessBioseq()
420 *m_Out << (*bs); in ProcessBioseq()
[all …]
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