Searched refs:m_align_map (Results 1 – 1 of 1) sorted by relevance
229 …m_align(0), m_cds_info(0), m_align_map(0), m_left_member(0), m_right_member(0), m_sink_for_contain… in SChainMember()247 CAlignMap* m_align_map; member1940 m_members.back().m_align_map = &m_align_maps.back(); in InsertMember()1942 m_members.back().m_align_map = copy_ofp->m_align_map; in InsertMember()2349 TSignedSeqPos j_from = mi.m_align_map->MapOrigToEdited(aj_rf.GetFrom()); in CanIncludeJinI()2352 TSignedSeqPos i_from = mi.m_align_map->MapOrigToEdited(ai_rf.GetFrom()); in CanIncludeJinI()2573 cds_overlap = mi.m_align_map->FShiftedLen(ai_rf&aj_rf,false); in LRCanChainItoJ()2621 mi.m_cds = mi.m_align_map->FShiftedLen(ai_rf,false); in LRIinit()2813 cds_overlap = mi.m_align_map->FShiftedLen(ai_rf&aj_rf,false); in RightLeft()3546 …compatible = (parts[p]->isCompatible(ai) && Include(ai_rf,aj_rf) && mi.m_align_map->FShiftedLen(ai… in FindOptimalChainForProtein()