| /dports/biology/py-pysam/pysam-0.18.0/samtools/ |
| H A D | bam_mate.c | 243 uint32_t mate_score = calc_mate_score(src); in add_mate_score() local
249 if (bam_aux_append(dest, "ms", 'i', sizeof(uint32_t), (uint8_t*)&mate_score) == -1) { in add_mate_score()
433 int c, remove_reads = 0, proper_pair_check = 1, add_ct = 0, res = 1, mate_score = 0, no_pg = 0; in bam_mating() local
450 case 'm': mate_score = 1; break; in bam_mating()
484 …res = bam_mating_core(in, out, remove_reads, proper_pair_check, add_ct, mate_score, arg_list, no_p… in bam_mating()
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| H A D | bam_mate.c.pysam.c | 245 uint32_t mate_score = calc_mate_score(src); in add_mate_score() local
251 if (bam_aux_append(dest, "ms", 'i', sizeof(uint32_t), (uint8_t*)&mate_score) == -1) { in add_mate_score()
435 int c, remove_reads = 0, proper_pair_check = 1, add_ct = 0, res = 1, mate_score = 0, no_pg = 0; in bam_mating() local
452 case 'm': mate_score = 1; break; in bam_mating()
486 …res = bam_mating_core(in, out, remove_reads, proper_pair_check, add_ct, mate_score, arg_list, no_p… in bam_mating()
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| H A D | bam_markdup.c | 102 int64_t mate_score; member
1066 c->mate_score = 0; in check_chain_against_original()
1122 if ((c->mate_score = get_mate_score(current->b)) == -1) { in check_chain_against_original()
1211 chk_score += chk->mate_score; in check_duplicate_chain()
1212 cur_score += current->mate_score; in check_duplicate_chain()
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| H A D | bam_markdup.c.pysam.c | 104 int64_t mate_score; member
1068 c->mate_score = 0; in check_chain_against_original()
1124 if ((c->mate_score = get_mate_score(current->b)) == -1) { in check_chain_against_original()
1213 chk_score += chk->mate_score; in check_duplicate_chain()
1214 cur_score += current->mate_score; in check_duplicate_chain()
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| /dports/biology/samtools/samtools-1.14/ |
| H A D | bam_mate.c | 243 uint32_t mate_score = calc_mate_score(src); in add_mate_score() local
249 if (bam_aux_append(dest, "ms", 'i', sizeof(uint32_t), (uint8_t*)&mate_score) == -1) { in add_mate_score()
433 int c, remove_reads = 0, proper_pair_check = 1, add_ct = 0, res = 1, mate_score = 0, no_pg = 0; in bam_mating() local
450 case 'm': mate_score = 1; break; in bam_mating()
484 …res = bam_mating_core(in, out, remove_reads, proper_pair_check, add_ct, mate_score, arg_list, no_p… in bam_mating()
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| H A D | bam_markdup.c | 102 int64_t mate_score; member
1066 c->mate_score = 0; in check_chain_against_original()
1122 if ((c->mate_score = get_mate_score(current->b)) == -1) { in check_chain_against_original()
1211 chk_score += chk->mate_score; in check_duplicate_chain()
1212 cur_score += current->mate_score; in check_duplicate_chain()
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| /dports/games/crafty/crafty-25.2_1/ |
| H A D | evaluate.c | 796 int mate_score = 0, enemy = Flip(side); in EvaluateMate() local
811 mate_score = b_n_mate_dark_squares[KingSQ(enemy)]; in EvaluateMate()
813 mate_score = b_n_mate_light_squares[KingSQ(enemy)]; in EvaluateMate()
824 mate_score = mate[KingSQ(enemy)]; in EvaluateMate()
833 mate_score -= Distance(KingSQ(side), KingSQ(enemy)) * king_king_tropism; in EvaluateMate()
834 tree->score_eg += sign[side] * mate_score; in EvaluateMate()
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| /dports/games/gnuchess/gnuchess-6.2.9/src/adapter/ |
| H A D | uci.cpp | 66 static int mate_score (int dist);
851 uci->score = mate_score(n); in parse_score()
868 static int mate_score(int dist) { in mate_score() function
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| /dports/games/polyglot/polyglot-1.4.70b/ |
| H A D | uci.c | 57 static int mate_score (int dist);
929 uci->score = mate_score(n); in parse_score()
946 static int mate_score(int dist) { in mate_score() function
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/magicblast/ |
| H A D | magicblast_util.cpp | 520 int mate_score = 0; in PrintTabular() local
521 mate->GetNamedScore(CSeq_align::eScore_Score, mate_score); in PrintTabular()
522 fragment_score += mate_score; in PrintTabular()
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