Searched refs:max_cds_limits (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | gnomon_model.cpp | 1992 TSignedSeqRange max_cds_limits; in ParseAttributes() local
1995 max_cds_limits = tlim; in ParseAttributes()
1999 max_cds_limits.SetFrom(start.GetFrom()); in ParseAttributes()
2001 max_cds_limits.SetTo(stop.GetTo()); in ParseAttributes()
2005 max_cds_limits = StringToRange(attributes["maxCDS"]); in ParseAttributes()
2007 max_cds_limits = a.GetAlignMap().MapRangeOrigToEdited(max_cds_limits, false); in ParseAttributes()
2011 if(max_cds_limits.GetTo() < tlim.GetTo()) in ParseAttributes()
2012 cds_info.Set5PrimeCdsLimit(max_cds_limits.GetTo()); in ParseAttributes()
2014 if(max_cds_limits.GetFrom() > tlim.GetFrom()) in ParseAttributes()
2015 cds_info.Set5PrimeCdsLimit(max_cds_limits.GetFrom()); in ParseAttributes()
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| H A D | chainer.cpp | 2342 TSignedSeqRange max_cds_limits = ai_cds_info.MaxCdsLimits() & aj_cds_info.MaxCdsLimits(); in CanIncludeJinI() local
2343 …if (!Include(max_cds_limits, ExtendedMaxCdsLimits(ai, ai_cds_info) + ExtendedMaxCdsLimits(aj, aj_c… in CanIncludeJinI()
2565 TSignedSeqRange max_cds_limits = ai_cds_info.MaxCdsLimits() & aj_cds_info.MaxCdsLimits(); in LRCanChainItoJ() local
2567 …if (!Include(max_cds_limits, ExtendedMaxCdsLimits(ai, ai_cds_info) + ExtendedMaxCdsLimits(aj, aj_c… in LRCanChainItoJ()
2805 … TSignedSeqRange max_cds_limits = ai_cds_info.MaxCdsLimits() & aj_cds_info.MaxCdsLimits(); in RightLeft() local
2807 …if (!Include(max_cds_limits, ExtendedMaxCdsLimits(ai, ai_cds_info) + ExtendedMaxCdsLimits(aj, aj_c… in RightLeft()
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