Searched refs:part_to_connect (Results 1 – 1 of 1) sorted by relevance
3524 int part_to_connect = parts.size()-1; in FindOptimalChainForProtein() local3525 … while(part_to_connect >= 0 && ai.Limits().GetFrom() <= parts[part_to_connect]->Limits().GetFrom()) in FindOptimalChainForProtein()3526 --part_to_connect; in FindOptimalChainForProtein()3528 …if(part_to_connect >=0 && ai.Limits().GetFrom() < parts[part_to_connect]->Limits().GetTo() && !par… in FindOptimalChainForProtein()3540 for(int p = part_to_connect+1; p < (int)parts.size(); ++p) { in FindOptimalChainForProtein()3571 …_ASSERT(part_to_connect < 0 || part_to_connect == (int)parts.size()-1 || mi.m_type == eCDS); // … in FindOptimalChainForProtein()3578 …lb = lower_bound(right_ends.begin(),right_ends.end(),(part_to_connect >= 0 ? parts[part_to_connect… in FindOptimalChainForProtein()3585 …if(part_to_connect >= 0 && mj.m_fully_connected_to_part < part_to_connect) // alignmnet is not c… in FindOptimalChainForProtein()3593 …if(ai.Limits().GetFrom() > aj.Limits().GetTo() && part_to_connect >= 0 && part_to_connect < (int)p… in FindOptimalChainForProtein()3609 mi.m_fully_connected_to_part = part_to_connect; in FindOptimalChainForProtein()[all …]