Searched refs:prot_rf (Results 1 – 2 of 2) sorted by relevance
291 TSignedSeqRange prot_rf = amap.MapRangeEditedToOrig(ProtReadingFrame(), true); in MapFromEditedToOrig() local292 if(prot_rf.NotEmpty()) in MapFromEditedToOrig()293 new_cds.SetReadingFrame(prot_rf, true); in MapFromEditedToOrig()
5039 auto prot_rf = cds_info_t.ProtReadingFrame(); in SetConfirmedEnds() local5040 …if(prot_rf.NotEmpty() && ((fivep_confirmed && !has_start) || (threep_confirmed && !has_stop))) { /… in SetConfirmedEnds()5054 …for(int i = prot_rf.GetFrom(); !has_start && i >= cds_limits_t.GetFrom() && !IsStopCodon(&mrna[i])… in SetConfirmedEnds()5057 …for(int i = prot_rf.GetFrom(); !has_start && i < cds_limits_t.GetTo(); i += 3) { … in SetConfirmedEnds()5058 if(i > prot_rf.GetTo() && IsStopCodon(&mrna[i])) in SetConfirmedEnds()5067 …for(int i = prot_rf.GetTo()+1; !has_stop && i < cds_limits_t.GetTo(); i += 3) //find stop outside … in SetConfirmedEnds()