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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/stellar/tests/
H A De-4.gff1 seq1 Stellar eps-matches 82310 82509 100 + . seq2;seq2Range=240272,240471;eValue=1.47693e-92;cigar=…
2 seq1 Stellar eps-matches 625772 625971 100 + . seq2;seq2Range=333383,333582;eValue=1.47693e-92;ciga…
3 seq1 Stellar eps-matches 728200 728397 100 + . seq2;seq2Range=4386,4583;eValue=1.59581e-91;cigar=19…
4 seq1 Stellar eps-matches 147640 147836 100 + . seq2;seq2Range=788440,788636;eValue=5.24555e-91;ciga…
5 seq1 Stellar eps-matches 190510 190706 100 + . seq2;seq2Range=698851,699047;eValue=5.24555e-91;ciga…
6 seq1 Stellar eps-matches 275537 275733 100 + . seq2;seq2Range=101435,101631;eValue=5.24555e-91;ciga…
7 seq1 Stellar eps-matches 372658 372854 100 + . seq2;seq2Range=378774,378970;eValue=5.24555e-91;ciga…
8 seq1 Stellar eps-matches 653992 654188 100 + . seq2;seq2Range=116391,116587;eValue=5.24555e-91;ciga…
9 seq1 Stellar eps-matches 965002 965198 100 + . seq2;seq2Range=74177,74373;eValue=5.24555e-91;cigar=…
10 seq1 Stellar eps-matches 992093 992289 100 + . seq2;seq2Range=829958,830154;eValue=5.24555e-91;ciga…
[all …]
H A D25e-3.gff326 seq1 Stellar eps-matches 432107 432206 98 + . seq2;seq2Range=21883,21982;eValue=8.93853e-38;cigar=1…
359 seq1 Stellar eps-matches 354883 354970 97.7272 + . seq2;seq2Range=93312,93398;eValue=1.4223e-31;cig…
369 seq1 Stellar eps-matches 23013 23097 97.647 + . seq2;seq2Range=25941,26025;eValue=5.05153e-30;cigar…
400 seq1 Stellar eps-matches 288256 288331 98.6842 + . seq2;seq2Range=41595,41669;eValue=6.37214e-27;ci…
404 seq1 Stellar eps-matches 98929 99003 98.6666 + . seq2;seq2Range=834256,834330;eValue=2.09457e-26;ci…
412 seq1 Stellar eps-matches 119580 119652 98.6301 + . seq2;seq2Range=674975,675047;eValue=2.26317e-25;…
413 seq1 Stellar eps-matches 168794 168866 98.6301 + . seq2;seq2Range=69442,69513;eValue=2.26317e-25;ci…
428 seq1 Stellar eps-matches 47836 47904 98.5507 + . seq2;seq2Range=936747,936815;eValue=2.64215e-23;ci…
447 seq1 Stellar eps-matches 869653 869718 98.4848 + . seq2;seq2Range=39208,39272;eValue=9.38403e-22;ci…
459 seq1 Stellar eps-matches 534398 534460 98.4126 + . seq2;seq2Range=922082,922144;eValue=3.33289e-20;…
[all …]
H A DminLen20.gff524 seq1 Stellar eps-matches 5112 5131 95 + . seq2;seq2Range=97054,97073;eValue=556.762;cigar=20M;mutat…
525 seq1 Stellar eps-matches 61373 61392 95 + . seq2;seq2Range=308159,308177;eValue=556.762;cigar=9M1D1…
536 seq1 Stellar eps-matches 187404 187423 95 + . seq2;seq2Range=839902,839921;eValue=556.762;cigar=20M…
537 seq1 Stellar eps-matches 219222 219241 95 + . seq2;seq2Range=582302,582321;eValue=556.762;cigar=20M…
544 seq1 Stellar eps-matches 306064 306083 95 + . seq2;seq2Range=110443,110462;eValue=556.762;cigar=20M…
547 seq1 Stellar eps-matches 361339 361358 95 + . seq2;seq2Range=94405,94423;eValue=556.762;cigar=15M1D…
548 seq1 Stellar eps-matches 364694 364713 95 + . seq2;seq2Range=410818,410837;eValue=556.762;cigar=20M…
551 seq1 Stellar eps-matches 422965 422984 95 + . seq2;seq2Range=486912,486931;eValue=556.762;cigar=20M…
561 seq1 Stellar eps-matches 620445 620464 95 + . seq2;seq2Range=974693,974712;eValue=556.762;cigar=20M…
562 seq1 Stellar eps-matches 631779 631798 95 + . seq2;seq2Range=327009,327028;eValue=556.762;cigar=20M…
[all …]
H A D5e-2.gff414 seq1 Stellar eps-matches 414468 414547 95 + . seq2;seq2Range=74828,74904;eValue=2.44533e-24;cigar=2…
428 seq1 Stellar eps-matches 734068 734142 96 + . seq2;seq2Range=940130,940203;eValue=2.64215e-23;cigar…
462 seq1 Stellar eps-matches 418242 418304 95.238 + . seq2;seq2Range=615281,615343;eValue=4.2042e-17;ci…
472 seq1 Stellar eps-matches 19838 19898 95.0819 + . seq2;seq2Range=359088,359147;eValue=4.5426e-16;cig…
476 seq1 Stellar eps-matches 136259 136318 95 + . seq2;seq2Range=951926,951982;eValue=1.49319e-15;cigar…
480 seq1 Stellar eps-matches 13993 14049 96.4912 + . seq2;seq2Range=154364,154420;eValue=1.49319e-15;ci…
482 seq1 Stellar eps-matches 574387 574442 96.4912 + . seq2;seq2Range=51428,51484;eValue=1.49319e-15;ci…
485 seq1 Stellar eps-matches 350355 350409 96.3636 + . seq2;seq2Range=4812,4864;eValue=1.61338e-14;ciga…
490 seq1 Stellar eps-matches 367394 367447 96.2962 + . seq2;seq2Range=228730,228781;eValue=5.3033e-14;c…
493 seq1 Stellar eps-matches 150509 150561 96.2264 + . seq2;seq2Range=259178,259229;eValue=1.74324e-13;…
[all …]
H A D75e-3.gff446 seq1 Stellar eps-matches 79236 79302 92.5373 + . seq2;seq2Range=411886,411948;eValue=4.5426e-16;cig…
456 seq1 Stellar eps-matches 7422 7484 93.75 + . seq2;seq2Range=793142,793202;eValue=4.5426e-16;cigar=3…
460 seq1 Stellar eps-matches 416645 416706 93.5483 + . seq2;seq2Range=296747,296806;eValue=4.90823e-15;…
461 seq1 Stellar eps-matches 421474 421535 93.5483 + . seq2;seq2Range=274383,274441;eValue=4.90823e-15;…
462 seq1 Stellar eps-matches 510329 510390 93.5483 + . seq2;seq2Range=797284,797343;eValue=4.90823e-15;…
466 seq1 Stellar eps-matches 297778 297838 93.4426 + . seq2;seq2Range=424608,424667;eValue=1.61338e-14;…
476 seq1 Stellar eps-matches 542407 542464 93.1034 + . seq2;seq2Range=988900,988954;eValue=5.73016e-13;…
478 seq1 Stellar eps-matches 857953 858010 93.1034 + . seq2;seq2Range=190954,191009;eValue=5.73016e-13;…
492 seq1 Stellar eps-matches 305713 305767 92.7272 + . seq2;seq2Range=205485,205538;eValue=2.03516e-11;…
494 seq1 Stellar eps-matches 556749 556803 92.8571 + . seq2;seq2Range=8987,9040;eValue=6.19138e-12;ciga…
[all …]
H A DminLen150.gff1 seq1 Stellar eps-matches 203842 204051 95.3051 + . seq2;seq2Range=797542,797749;eValue=9.01857e-84;…
2 seq1 Stellar eps-matches 376267 376474 95.238 + . seq2;seq2Range=839295,839499;eValue=3.20309e-82;c…
4 seq1 Stellar eps-matches 35180 35383 95.1456 + . seq2;seq2Range=370909,371107;eValue=3.73947e-80;ci…
77 seq1 Stellar eps-matches 566935 567110 95.4545 + . seq2;seq2Range=541251,541421;eValue=9.46806e-68;…
125 seq1 Stellar eps-matches 846534 846697 95.1219 + . seq2;seq2Range=942823,942982;eValue=1.50656e-61;…
147 seq1 Stellar eps-matches 114541 114696 95.5414 + . seq2;seq2Range=631926,632079;eValue=1.75885e-59;…
152 seq1 Stellar eps-matches 571624 571778 95.4838 + . seq2;seq2Range=512505,512656;eValue=1.90042e-58;…
162 seq1 Stellar eps-matches 963763 963915 95.4545 + . seq2;seq2Range=686289,686436;eValue=6.24682e-58;…
163 seq1 Stellar eps-matches 643 794 95.4545 + . seq2;seq2Range=216373,216523;eValue=6.24682e-58;cigar=…
172 seq1 Stellar eps-matches 827913 828061 95.3333 + . seq2;seq2Range=594697,594841;eValue=7.29291e-56;…
[all …]
H A De-1.gff421 seq1 Stellar eps-matches 652223 652299 90.909 + . seq2;seq2Range=861694,861767;eValue=3.89101e-18;c…
424 seq1 Stellar eps-matches 21451 21526 90.7894 + . seq2;seq2Range=26174,26243;eValue=1.27901e-17;ciga…
441 seq1 Stellar eps-matches 484161 484230 90 + . seq2;seq2Range=938351,938417;eValue=1.61338e-14;cigar…
467 seq1 Stellar eps-matches 399203 399264 90.4761 + . seq2;seq2Range=512336,512395;eValue=1.88355e-12;…
483 seq1 Stellar eps-matches 187965 188020 91.0714 + . seq2;seq2Range=102083,102135;eValue=2.19897e-10;…
490 seq1 Stellar eps-matches 48474 48527 90.909 + . seq2;seq2Range=636181,636232;eValue=7.22819e-10;cig…
494 seq1 Stellar eps-matches 908121 908174 90.7407 + . seq2;seq2Range=378216,378264;eValue=2.37596e-09;…
496 seq1 Stellar eps-matches 178788 178839 90.3846 + . seq2;seq2Range=101810,101858;eValue=2.56721e-08;…
497 seq1 Stellar eps-matches 253766 253817 90.3846 + . seq2;seq2Range=54276,54325;eValue=2.56721e-08;ci…
498 seq1 Stellar eps-matches 667898 667949 90.7407 + . seq2;seq2Range=434236,434288;eValue=2.37596e-09;…
[all …]
/dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/sequence/tests/
H A Dtest_distance.py22 seq2 = 'abc'
25 hamming(seq1, seq2)
28 hamming(seq2, seq1)
32 seq2 = DNA('ACG')
47 seq2 = Sequence('ABC')
80 seq2 = Sequence('')
88 seq2 = Sequence('b')
95 seq2 = DNA('ACCTT')
197 seq2 = Sequence('')
222 seq2 = DNA('ATC')
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/store/
H A Dex1_b.sam1 @SQ SN:seq2 LN:1584
2 B7_591:8:4:841:340 73 seq2 1 99 36M * 0 0 TTCAAATGAACTTCTGTAATTGAAAAATTCATTTAA <<<<<<<<;<<<<<<<<;<<…
131 EAS192_3:5:287:334:110 133 seq2 196 0 * = 196 0 GATGAATACTAAGATTGATGTAGCAGCTTTTGCAA .5+7)09<))&-&:3…
235 EAS188_7:3:15:568:42 181 seq2 269 0 * = 269 0 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATA !!!!!!!!!++++!!!!…
239 EAS51_64:6:206:994:556 133 seq2 270 0 * = 270 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
333 EAS51_64:7:104:965:517 133 seq2 333 0 * = 333 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
683 EAS139_11:7:53:458:581 133 seq2 583 0 * = 583 0 CTCAATTAATTGTTTTATAAAACCTGTGAGTTTTG <<<<<<<<<<<<<<<…
694 EAS188_7:1:177:522:118 69 seq2 594 0 * = 594 0 TCTCAATTAATTGTTTTATAAAACCTGTGAGTTTT <<<<<<<<<<<<<<<<…
698 EAS51_62:8:52:967:804 133 seq2 596 0 * = 596 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT ===============<…
745 EAS1_105:1:141:415:738 69 seq2 624 0 * = 624 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT <<<<<<<<<<<<<<<<…
[all …]
H A Dex1.sam2 @SQ SN:seq2 LN:1584
1633 EAS192_3:5:287:334:110 133 seq2 196 0 * = 196 0 GATGAATACTAAGATTGATGTAGCAGCTTTTGCAA .5+7)09<))&-&:3…
1737 EAS188_7:3:15:568:42 181 seq2 269 0 * = 269 0 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATA !!!!!!!!!++++!!!!…
1741 EAS51_64:6:206:994:556 133 seq2 270 0 * = 270 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
1835 EAS51_64:7:104:965:517 133 seq2 333 0 * = 333 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
2185 EAS139_11:7:53:458:581 133 seq2 583 0 * = 583 0 CTCAATTAATTGTTTTATAAAACCTGTGAGTTTTG <<<<<<<<<<<<<<<…
2196 EAS188_7:1:177:522:118 69 seq2 594 0 * = 594 0 TCTCAATTAATTGTTTTATAAAACCTGTGAGTTTT <<<<<<<<<<<<<<<<…
2200 EAS51_62:8:52:967:804 133 seq2 596 0 * = 596 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT ===============<…
2247 EAS1_105:1:141:415:738 69 seq2 624 0 * = 624 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT <<<<<<<<<<<<<<<<…
2538 EAS114_30:6:4:665:771 69 seq2 862 0 * = 862 0 GTGCTTTATCTGATATCAATGCCGATAAACTGCCT <<<<<<<<<<<<%<8<3…
[all …]
/dports/mail/dovecot/dovecot-2.3.17/src/lib/
H A Dseq-range-array.c70 data[idx-1].seq2 = data[idx].seq2; in seq_range_array_add_slow_path()
168 overcounted += data[idx2].seq2 - seq2; in seq_range_array_add_range_internal()
189 value.seq2 = seq2; in seq_range_array_add_range_internal()
195 if (seq2 > data[idx1].seq2) { in seq_range_array_add_range_internal()
200 if (seq2 >= data[idx2].seq2) { in seq_range_array_add_range_internal()
201 data[idx1].seq2 = seq2; in seq_range_array_add_range_internal()
203 data[idx1].seq2 = data[idx2].seq2; in seq_range_array_add_range_internal()
320 data[idx].seq2--; in seq_range_array_remove()
324 value.seq2 = data[idx].seq2; in seq_range_array_remove()
348 if (seq1 == seq2) in seq_range_array_remove_range()
[all …]
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/blink/renderer/core/html/
H A Dhtml_slot_element_test.cc37 size_t c = seq2.size(); in LongestCommonSubsequence()
55 Seq seq2{}; in TEST_F() local
60 Seq seq2{}; in TEST_F() local
65 Seq seq2{'a'}; in TEST_F() local
70 Seq seq2{'a'}; in TEST_F() local
75 Seq seq2{'a'}; in TEST_F() local
80 Seq seq2{'b', 'a'}; in TEST_F() local
86 Seq seq2{}; in TEST_F() local
97 Seq seq2{'b', 'a', 'c'}; in TEST_F() local
111 Seq seq2{'a', 'd'}; in TEST_F() local
[all …]
/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/blink/renderer/core/html/
H A Dhtml_slot_element_test.cc37 size_t c = seq2.size(); in LongestCommonSubsequence()
55 Seq seq2{}; in TEST_F() local
60 Seq seq2{}; in TEST_F() local
65 Seq seq2{'a'}; in TEST_F() local
70 Seq seq2{'a'}; in TEST_F() local
75 Seq seq2{'a'}; in TEST_F() local
80 Seq seq2{'b', 'a'}; in TEST_F() local
86 Seq seq2{}; in TEST_F() local
97 Seq seq2{'b', 'a', 'c'}; in TEST_F() local
111 Seq seq2{'a', 'd'}; in TEST_F() local
[all …]
/dports/biology/py-biopython/biopython-1.79/Tests/
H A Dpairwise2_testCases.py102 seq1, seq2, score, begin, end = aligns[0]
113 seq1, seq2, score, begin, end = aligns[1]
130 seq1, seq2, score, begin, end = aligns[0]
141 seq1, seq2, score, begin, end = aligns[1]
166 seq1, seq2, score, begin, end = aligns[0]
184 seq1, seq2, score, begin, end = aligns[0]
202 seq1, seq2, score, begin, end = aligns[0]
783 seq2 = "AABBBAAAACCCCAAAABBBAA"
794 breaks = [0, 11, len(seq2)]
818 seq2 = "AABBBAAAACCCCAAAABBBAA"
[all …]
H A Dcommon_BioSQL.py576 seq2 = self.item2.seq
598 seq2 == Seq(None, len(seq2))
606 Seq(None, len(seq2)) == seq2
614 seq2 = self.item2.seq
652 seq2 != Seq(None, len(seq2))
660 Seq(None, len(seq2)) != seq2
697 seq2 < Seq(None, len(seq2))
751 seq2 < Seq(None, len(seq2))
805 seq2 < Seq(None, len(seq2))
859 seq2 < Seq(None, len(seq2))
[all …]
H A Dtest_SeqIO_TwoBitIO.py30 seq2 = record2.seq
47 seq2 = record2.seq
139 seq2 = self.seq2a
160 seq2 < Seq(None, len(seq2))
164 seq2 < Seq(None, 10)
168 seq2 = self.seq2a
197 seq2 <= Seq(None, len(seq2))
205 seq2 = self.seq2a
234 seq2 > Seq(None, len(seq2))
242 seq2 = self.seq2a
[all …]
/dports/editors/libreoffice/libreoffice-7.2.6.2/extensions/test/ole/OleClient/
H A Dfuncs.cxx178 Sequence<Any> seq2; in equalSequences() local
179 returned >>= seq2; in equalSequences()
187 returned >>= seq2; in equalSequences()
195 returned >>= seq2; in equalSequences()
203 returned >>= seq2; in equalSequences()
211 returned >>= seq2; in equalSequences()
219 returned >>= seq2; in equalSequences()
227 returned >>= seq2; in equalSequences()
235 returned >>= seq2; in equalSequences()
243 returned >>= seq2; in equalSequences()
[all …]
/dports/editors/libreoffice6/libreoffice-6.4.7.2/extensions/test/ole/OleClient/
H A Dfuncs.cxx178 Sequence<Any> seq2; in equalSequences() local
179 returned >>= seq2; in equalSequences()
187 returned >>= seq2; in equalSequences()
195 returned >>= seq2; in equalSequences()
203 returned >>= seq2; in equalSequences()
211 returned >>= seq2; in equalSequences()
219 returned >>= seq2; in equalSequences()
227 returned >>= seq2; in equalSequences()
235 returned >>= seq2; in equalSequences()
243 returned >>= seq2; in equalSequences()
[all …]
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dmegamerger.c45 AjPSeq seq2; in main() local
57 seq2 = ajAcdGetSeq("bsequence"); in main()
64 ajSeqTrim(seq2); in main()
92 ajSeqDel(&seq2); in main()
138 s2 = ajSeqGetSeqCopyS(seq2); in megamerger_Merge()
158 ajSeqGetNameC(seq2), p->seq2start+1); in megamerger_Merge()
171 ajSeqGetNameC(seq2), p->seq2start); in megamerger_Merge()
231 ajSeqGetNameC(seq2), prev2end); in megamerger_Merge()
256 ajSeqGetNameC(seq2)); in megamerger_Merge()
318 ajSeqGetLen(seq2)); in megamerger_Merge()
[all …]
/dports/net/concourse-fly/concourse-6.7.1/vendor/github.com/aryann/difflib/
H A Ddifflib.go66 func Diff(seq1, seq2 []string) (diff []DiffRecord) {
76 diffRes := compute(seq1[start:len(seq1)-end], seq2[start:len(seq2)-end])
97 func HTMLDiff(seq1, seq2 []string) string {
100 for _, d := range Diff(seq1, seq2) {
131 for start < len(seq1) && start < len(seq2) && seq1[start] == seq2[start] {
134 i, j := len(seq1)-1, len(seq2)-1
135 for i > start && j > start && seq1[i] == seq2[j] {
157 matrix := intMatrix(len(seq1)+1, len(seq2)+1)
160 if seq1[len(seq1)-i] == seq2[len(seq2)-j] {
175 i, j := len(seq1), len(seq2)
[all …]
/dports/sysutils/helmfile/helmfile-0.138.7/vendor/github.com/aryann/difflib/
H A Ddifflib.go66 func Diff(seq1, seq2 []string) (diff []DiffRecord) {
76 diffRes := compute(seq1[start:len(seq1)-end], seq2[start:len(seq2)-end])
97 func HTMLDiff(seq1, seq2 []string) string {
100 for _, d := range Diff(seq1, seq2) {
131 for start < len(seq1) && start < len(seq2) && seq1[start] == seq2[start] {
134 i, j := len(seq1)-1, len(seq2)-1
135 for i > start && j > start && seq1[i] == seq2[j] {
157 matrix := intMatrix(len(seq1)+1, len(seq2)+1)
160 if seq1[len(seq1)-i] == seq2[len(seq2)-j] {
175 i, j := len(seq1), len(seq2)
[all …]
/dports/misc/concourse/concourse-6.7.2/vendor/github.com/aryann/difflib/
H A Ddifflib.go66 func Diff(seq1, seq2 []string) (diff []DiffRecord) {
76 diffRes := compute(seq1[start:len(seq1)-end], seq2[start:len(seq2)-end])
97 func HTMLDiff(seq1, seq2 []string) string {
100 for _, d := range Diff(seq1, seq2) {
131 for start < len(seq1) && start < len(seq2) && seq1[start] == seq2[start] {
134 i, j := len(seq1)-1, len(seq2)-1
135 for i > start && j > start && seq1[i] == seq2[j] {
157 matrix := intMatrix(len(seq1)+1, len(seq2)+1)
160 if seq1[len(seq1)-i] == seq2[len(seq2)-j] {
175 i, j := len(seq1), len(seq2)
[all …]
/dports/textproc/py-whoosh/Whoosh-2.7.4/src/whoosh/support/
H A Dlevenshtein.py8 def levenshtein(seq1, seq2, limit=None): argument
13 thisrow = list(range(1, len(seq2) + 1)) + [0]
18 oneago, thisrow = thisrow, [0] * len(seq2) + [x + 1]
19 for y in xrange(len(seq2)):
22 subcost = oneago[y - 1] + (seq1[x] != seq2[y])
28 return thisrow[len(seq2) - 1]
31 def damerau_levenshtein(seq1, seq2, limit=None): argument
36 thisrow = list(range(1, len(seq2) + 1)) + [0]
42 for y in xrange(len(seq2)):
49 and seq1[x - 1] == seq2[y] and seq1[x] != seq2[y]):
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/fragment_store/
H A Dexample.sam2 @SQ SN:seq2 LN:1584
1633 EAS192_3:5:287:334:110 133 seq2 196 0 * = 196 0 GATGAATACTAAGATTGATGTAGCAGCTTTTGCAA .5+7)09<))&-&:3…
1737 EAS188_7:3:15:568:42 181 seq2 269 0 * = 269 0 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATA !!!!!!!!!++++!!!!…
1741 EAS51_64:6:206:994:556 133 seq2 270 0 * = 270 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
1835 EAS51_64:7:104:965:517 133 seq2 333 0 * = 333 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!…
2185 EAS139_11:7:53:458:581 133 seq2 583 0 * = 583 0 CTCAATTAATTGTTTTATAAAACCTGTGAGTTTTG <<<<<<<<<<<<<<<…
2196 EAS188_7:1:177:522:118 69 seq2 594 0 * = 594 0 TCTCAATTAATTGTTTTATAAAACCTGTGAGTTTT <<<<<<<<<<<<<<<<…
2200 EAS51_62:8:52:967:804 133 seq2 596 0 * = 596 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT ===============<…
2247 EAS1_105:1:141:415:738 69 seq2 624 0 * = 624 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT <<<<<<<<<<<<<<<<…
2538 EAS114_30:6:4:665:771 69 seq2 862 0 * = 862 0 GTGCTTTATCTGATATCAATGCCGATAAACTGCCT <<<<<<<<<<<<%<8<3…
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/
H A Dalnmerger.cpp251 if ( seq2 ) in x_Merge()
260 if ( seq2 ) in x_Merge()
270 if (seq2) { in x_Merge()
298 if ( seq2 ) in x_Merge()
334 if (seq2) { in x_Merge()
446 seq2 = match->m_AlnSeq2 = seq2->m_ExtraRow = row; in x_Merge()
449 seq2 = match->m_AlnSeq2 = seq2->m_ExtraRow; in x_Merge()
706 seq2 = match->m_AlnSeq2 = seq2->m_ExtraRow = row; in x_Merge()
709 seq2 = match->m_AlnSeq2 = seq2->m_ExtraRow; in x_Merge()
875 seq2 = seq2->m_ExtraRow; in x_SecondRowFits()
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