/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/stellar/tests/ |
H A D | e-4.gff | 1 seq1 Stellar eps-matches 82310 82509 100 + . seq2;seq2Range=240272,240471;eValue=1.47693e-92;cigar=… 2 seq1 Stellar eps-matches 625772 625971 100 + . seq2;seq2Range=333383,333582;eValue=1.47693e-92;ciga… 3 seq1 Stellar eps-matches 728200 728397 100 + . seq2;seq2Range=4386,4583;eValue=1.59581e-91;cigar=19… 4 seq1 Stellar eps-matches 147640 147836 100 + . seq2;seq2Range=788440,788636;eValue=5.24555e-91;ciga… 5 seq1 Stellar eps-matches 190510 190706 100 + . seq2;seq2Range=698851,699047;eValue=5.24555e-91;ciga… 6 seq1 Stellar eps-matches 275537 275733 100 + . seq2;seq2Range=101435,101631;eValue=5.24555e-91;ciga… 7 seq1 Stellar eps-matches 372658 372854 100 + . seq2;seq2Range=378774,378970;eValue=5.24555e-91;ciga… 8 seq1 Stellar eps-matches 653992 654188 100 + . seq2;seq2Range=116391,116587;eValue=5.24555e-91;ciga… 9 seq1 Stellar eps-matches 965002 965198 100 + . seq2;seq2Range=74177,74373;eValue=5.24555e-91;cigar=… 10 seq1 Stellar eps-matches 992093 992289 100 + . seq2;seq2Range=829958,830154;eValue=5.24555e-91;ciga… [all …]
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H A D | 25e-3.gff | 326 seq1 Stellar eps-matches 432107 432206 98 + . seq2;seq2Range=21883,21982;eValue=8.93853e-38;cigar=1… 359 seq1 Stellar eps-matches 354883 354970 97.7272 + . seq2;seq2Range=93312,93398;eValue=1.4223e-31;cig… 369 seq1 Stellar eps-matches 23013 23097 97.647 + . seq2;seq2Range=25941,26025;eValue=5.05153e-30;cigar… 400 seq1 Stellar eps-matches 288256 288331 98.6842 + . seq2;seq2Range=41595,41669;eValue=6.37214e-27;ci… 404 seq1 Stellar eps-matches 98929 99003 98.6666 + . seq2;seq2Range=834256,834330;eValue=2.09457e-26;ci… 412 seq1 Stellar eps-matches 119580 119652 98.6301 + . seq2;seq2Range=674975,675047;eValue=2.26317e-25;… 413 seq1 Stellar eps-matches 168794 168866 98.6301 + . seq2;seq2Range=69442,69513;eValue=2.26317e-25;ci… 428 seq1 Stellar eps-matches 47836 47904 98.5507 + . seq2;seq2Range=936747,936815;eValue=2.64215e-23;ci… 447 seq1 Stellar eps-matches 869653 869718 98.4848 + . seq2;seq2Range=39208,39272;eValue=9.38403e-22;ci… 459 seq1 Stellar eps-matches 534398 534460 98.4126 + . seq2;seq2Range=922082,922144;eValue=3.33289e-20;… [all …]
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H A D | minLen20.gff | 524 seq1 Stellar eps-matches 5112 5131 95 + . seq2;seq2Range=97054,97073;eValue=556.762;cigar=20M;mutat… 525 seq1 Stellar eps-matches 61373 61392 95 + . seq2;seq2Range=308159,308177;eValue=556.762;cigar=9M1D1… 536 seq1 Stellar eps-matches 187404 187423 95 + . seq2;seq2Range=839902,839921;eValue=556.762;cigar=20M… 537 seq1 Stellar eps-matches 219222 219241 95 + . seq2;seq2Range=582302,582321;eValue=556.762;cigar=20M… 544 seq1 Stellar eps-matches 306064 306083 95 + . seq2;seq2Range=110443,110462;eValue=556.762;cigar=20M… 547 seq1 Stellar eps-matches 361339 361358 95 + . seq2;seq2Range=94405,94423;eValue=556.762;cigar=15M1D… 548 seq1 Stellar eps-matches 364694 364713 95 + . seq2;seq2Range=410818,410837;eValue=556.762;cigar=20M… 551 seq1 Stellar eps-matches 422965 422984 95 + . seq2;seq2Range=486912,486931;eValue=556.762;cigar=20M… 561 seq1 Stellar eps-matches 620445 620464 95 + . seq2;seq2Range=974693,974712;eValue=556.762;cigar=20M… 562 seq1 Stellar eps-matches 631779 631798 95 + . seq2;seq2Range=327009,327028;eValue=556.762;cigar=20M… [all …]
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H A D | 5e-2.gff | 414 seq1 Stellar eps-matches 414468 414547 95 + . seq2;seq2Range=74828,74904;eValue=2.44533e-24;cigar=2… 428 seq1 Stellar eps-matches 734068 734142 96 + . seq2;seq2Range=940130,940203;eValue=2.64215e-23;cigar… 462 seq1 Stellar eps-matches 418242 418304 95.238 + . seq2;seq2Range=615281,615343;eValue=4.2042e-17;ci… 472 seq1 Stellar eps-matches 19838 19898 95.0819 + . seq2;seq2Range=359088,359147;eValue=4.5426e-16;cig… 476 seq1 Stellar eps-matches 136259 136318 95 + . seq2;seq2Range=951926,951982;eValue=1.49319e-15;cigar… 480 seq1 Stellar eps-matches 13993 14049 96.4912 + . seq2;seq2Range=154364,154420;eValue=1.49319e-15;ci… 482 seq1 Stellar eps-matches 574387 574442 96.4912 + . seq2;seq2Range=51428,51484;eValue=1.49319e-15;ci… 485 seq1 Stellar eps-matches 350355 350409 96.3636 + . seq2;seq2Range=4812,4864;eValue=1.61338e-14;ciga… 490 seq1 Stellar eps-matches 367394 367447 96.2962 + . seq2;seq2Range=228730,228781;eValue=5.3033e-14;c… 493 seq1 Stellar eps-matches 150509 150561 96.2264 + . seq2;seq2Range=259178,259229;eValue=1.74324e-13;… [all …]
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H A D | 75e-3.gff | 446 seq1 Stellar eps-matches 79236 79302 92.5373 + . seq2;seq2Range=411886,411948;eValue=4.5426e-16;cig… 456 seq1 Stellar eps-matches 7422 7484 93.75 + . seq2;seq2Range=793142,793202;eValue=4.5426e-16;cigar=3… 460 seq1 Stellar eps-matches 416645 416706 93.5483 + . seq2;seq2Range=296747,296806;eValue=4.90823e-15;… 461 seq1 Stellar eps-matches 421474 421535 93.5483 + . seq2;seq2Range=274383,274441;eValue=4.90823e-15;… 462 seq1 Stellar eps-matches 510329 510390 93.5483 + . seq2;seq2Range=797284,797343;eValue=4.90823e-15;… 466 seq1 Stellar eps-matches 297778 297838 93.4426 + . seq2;seq2Range=424608,424667;eValue=1.61338e-14;… 476 seq1 Stellar eps-matches 542407 542464 93.1034 + . seq2;seq2Range=988900,988954;eValue=5.73016e-13;… 478 seq1 Stellar eps-matches 857953 858010 93.1034 + . seq2;seq2Range=190954,191009;eValue=5.73016e-13;… 492 seq1 Stellar eps-matches 305713 305767 92.7272 + . seq2;seq2Range=205485,205538;eValue=2.03516e-11;… 494 seq1 Stellar eps-matches 556749 556803 92.8571 + . seq2;seq2Range=8987,9040;eValue=6.19138e-12;ciga… [all …]
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H A D | minLen150.gff | 1 seq1 Stellar eps-matches 203842 204051 95.3051 + . seq2;seq2Range=797542,797749;eValue=9.01857e-84;… 2 seq1 Stellar eps-matches 376267 376474 95.238 + . seq2;seq2Range=839295,839499;eValue=3.20309e-82;c… 4 seq1 Stellar eps-matches 35180 35383 95.1456 + . seq2;seq2Range=370909,371107;eValue=3.73947e-80;ci… 77 seq1 Stellar eps-matches 566935 567110 95.4545 + . seq2;seq2Range=541251,541421;eValue=9.46806e-68;… 125 seq1 Stellar eps-matches 846534 846697 95.1219 + . seq2;seq2Range=942823,942982;eValue=1.50656e-61;… 147 seq1 Stellar eps-matches 114541 114696 95.5414 + . seq2;seq2Range=631926,632079;eValue=1.75885e-59;… 152 seq1 Stellar eps-matches 571624 571778 95.4838 + . seq2;seq2Range=512505,512656;eValue=1.90042e-58;… 162 seq1 Stellar eps-matches 963763 963915 95.4545 + . seq2;seq2Range=686289,686436;eValue=6.24682e-58;… 163 seq1 Stellar eps-matches 643 794 95.4545 + . seq2;seq2Range=216373,216523;eValue=6.24682e-58;cigar=… 172 seq1 Stellar eps-matches 827913 828061 95.3333 + . seq2;seq2Range=594697,594841;eValue=7.29291e-56;… [all …]
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H A D | e-1.gff | 421 seq1 Stellar eps-matches 652223 652299 90.909 + . seq2;seq2Range=861694,861767;eValue=3.89101e-18;c… 424 seq1 Stellar eps-matches 21451 21526 90.7894 + . seq2;seq2Range=26174,26243;eValue=1.27901e-17;ciga… 441 seq1 Stellar eps-matches 484161 484230 90 + . seq2;seq2Range=938351,938417;eValue=1.61338e-14;cigar… 467 seq1 Stellar eps-matches 399203 399264 90.4761 + . seq2;seq2Range=512336,512395;eValue=1.88355e-12;… 483 seq1 Stellar eps-matches 187965 188020 91.0714 + . seq2;seq2Range=102083,102135;eValue=2.19897e-10;… 490 seq1 Stellar eps-matches 48474 48527 90.909 + . seq2;seq2Range=636181,636232;eValue=7.22819e-10;cig… 494 seq1 Stellar eps-matches 908121 908174 90.7407 + . seq2;seq2Range=378216,378264;eValue=2.37596e-09;… 496 seq1 Stellar eps-matches 178788 178839 90.3846 + . seq2;seq2Range=101810,101858;eValue=2.56721e-08;… 497 seq1 Stellar eps-matches 253766 253817 90.3846 + . seq2;seq2Range=54276,54325;eValue=2.56721e-08;ci… 498 seq1 Stellar eps-matches 667898 667949 90.7407 + . seq2;seq2Range=434236,434288;eValue=2.37596e-09;… [all …]
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/dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/sequence/tests/ |
H A D | test_distance.py | 22 seq2 = 'abc' 25 hamming(seq1, seq2) 28 hamming(seq2, seq1) 32 seq2 = DNA('ACG') 47 seq2 = Sequence('ABC') 80 seq2 = Sequence('') 88 seq2 = Sequence('b') 95 seq2 = DNA('ACCTT') 197 seq2 = Sequence('') 222 seq2 = DNA('ATC') [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/store/ |
H A D | ex1_b.sam | 1 @SQ SN:seq2 LN:1584 2 B7_591:8:4:841:340 73 seq2 1 99 36M * 0 0 TTCAAATGAACTTCTGTAATTGAAAAATTCATTTAA <<<<<<<<;<<<<<<<<;<<… 131 EAS192_3:5:287:334:110 133 seq2 196 0 * = 196 0 GATGAATACTAAGATTGATGTAGCAGCTTTTGCAA .5+7)09<))&-&:3… 235 EAS188_7:3:15:568:42 181 seq2 269 0 * = 269 0 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATA !!!!!!!!!++++!!!!… 239 EAS51_64:6:206:994:556 133 seq2 270 0 * = 270 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!… 333 EAS51_64:7:104:965:517 133 seq2 333 0 * = 333 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!… 683 EAS139_11:7:53:458:581 133 seq2 583 0 * = 583 0 CTCAATTAATTGTTTTATAAAACCTGTGAGTTTTG <<<<<<<<<<<<<<<… 694 EAS188_7:1:177:522:118 69 seq2 594 0 * = 594 0 TCTCAATTAATTGTTTTATAAAACCTGTGAGTTTT <<<<<<<<<<<<<<<<… 698 EAS51_62:8:52:967:804 133 seq2 596 0 * = 596 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT ===============<… 745 EAS1_105:1:141:415:738 69 seq2 624 0 * = 624 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT <<<<<<<<<<<<<<<<… [all …]
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H A D | ex1.sam | 2 @SQ SN:seq2 LN:1584 1633 EAS192_3:5:287:334:110 133 seq2 196 0 * = 196 0 GATGAATACTAAGATTGATGTAGCAGCTTTTGCAA .5+7)09<))&-&:3… 1737 EAS188_7:3:15:568:42 181 seq2 269 0 * = 269 0 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATA !!!!!!!!!++++!!!!… 1741 EAS51_64:6:206:994:556 133 seq2 270 0 * = 270 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!… 1835 EAS51_64:7:104:965:517 133 seq2 333 0 * = 333 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!… 2185 EAS139_11:7:53:458:581 133 seq2 583 0 * = 583 0 CTCAATTAATTGTTTTATAAAACCTGTGAGTTTTG <<<<<<<<<<<<<<<… 2196 EAS188_7:1:177:522:118 69 seq2 594 0 * = 594 0 TCTCAATTAATTGTTTTATAAAACCTGTGAGTTTT <<<<<<<<<<<<<<<<… 2200 EAS51_62:8:52:967:804 133 seq2 596 0 * = 596 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT ===============<… 2247 EAS1_105:1:141:415:738 69 seq2 624 0 * = 624 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT <<<<<<<<<<<<<<<<… 2538 EAS114_30:6:4:665:771 69 seq2 862 0 * = 862 0 GTGCTTTATCTGATATCAATGCCGATAAACTGCCT <<<<<<<<<<<<%<8<3… [all …]
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/dports/mail/dovecot/dovecot-2.3.17/src/lib/ |
H A D | seq-range-array.c | 70 data[idx-1].seq2 = data[idx].seq2; in seq_range_array_add_slow_path() 168 overcounted += data[idx2].seq2 - seq2; in seq_range_array_add_range_internal() 189 value.seq2 = seq2; in seq_range_array_add_range_internal() 195 if (seq2 > data[idx1].seq2) { in seq_range_array_add_range_internal() 200 if (seq2 >= data[idx2].seq2) { in seq_range_array_add_range_internal() 201 data[idx1].seq2 = seq2; in seq_range_array_add_range_internal() 203 data[idx1].seq2 = data[idx2].seq2; in seq_range_array_add_range_internal() 320 data[idx].seq2--; in seq_range_array_remove() 324 value.seq2 = data[idx].seq2; in seq_range_array_remove() 348 if (seq1 == seq2) in seq_range_array_remove_range() [all …]
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/blink/renderer/core/html/ |
H A D | html_slot_element_test.cc | 37 size_t c = seq2.size(); in LongestCommonSubsequence() 55 Seq seq2{}; in TEST_F() local 60 Seq seq2{}; in TEST_F() local 65 Seq seq2{'a'}; in TEST_F() local 70 Seq seq2{'a'}; in TEST_F() local 75 Seq seq2{'a'}; in TEST_F() local 80 Seq seq2{'b', 'a'}; in TEST_F() local 86 Seq seq2{}; in TEST_F() local 97 Seq seq2{'b', 'a', 'c'}; in TEST_F() local 111 Seq seq2{'a', 'd'}; in TEST_F() local [all …]
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/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/blink/renderer/core/html/ |
H A D | html_slot_element_test.cc | 37 size_t c = seq2.size(); in LongestCommonSubsequence() 55 Seq seq2{}; in TEST_F() local 60 Seq seq2{}; in TEST_F() local 65 Seq seq2{'a'}; in TEST_F() local 70 Seq seq2{'a'}; in TEST_F() local 75 Seq seq2{'a'}; in TEST_F() local 80 Seq seq2{'b', 'a'}; in TEST_F() local 86 Seq seq2{}; in TEST_F() local 97 Seq seq2{'b', 'a', 'c'}; in TEST_F() local 111 Seq seq2{'a', 'd'}; in TEST_F() local [all …]
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/dports/biology/py-biopython/biopython-1.79/Tests/ |
H A D | pairwise2_testCases.py | 102 seq1, seq2, score, begin, end = aligns[0] 113 seq1, seq2, score, begin, end = aligns[1] 130 seq1, seq2, score, begin, end = aligns[0] 141 seq1, seq2, score, begin, end = aligns[1] 166 seq1, seq2, score, begin, end = aligns[0] 184 seq1, seq2, score, begin, end = aligns[0] 202 seq1, seq2, score, begin, end = aligns[0] 783 seq2 = "AABBBAAAACCCCAAAABBBAA" 794 breaks = [0, 11, len(seq2)] 818 seq2 = "AABBBAAAACCCCAAAABBBAA" [all …]
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H A D | common_BioSQL.py | 576 seq2 = self.item2.seq 598 seq2 == Seq(None, len(seq2)) 606 Seq(None, len(seq2)) == seq2 614 seq2 = self.item2.seq 652 seq2 != Seq(None, len(seq2)) 660 Seq(None, len(seq2)) != seq2 697 seq2 < Seq(None, len(seq2)) 751 seq2 < Seq(None, len(seq2)) 805 seq2 < Seq(None, len(seq2)) 859 seq2 < Seq(None, len(seq2)) [all …]
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H A D | test_SeqIO_TwoBitIO.py | 30 seq2 = record2.seq 47 seq2 = record2.seq 139 seq2 = self.seq2a 160 seq2 < Seq(None, len(seq2)) 164 seq2 < Seq(None, 10) 168 seq2 = self.seq2a 197 seq2 <= Seq(None, len(seq2)) 205 seq2 = self.seq2a 234 seq2 > Seq(None, len(seq2)) 242 seq2 = self.seq2a [all …]
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/dports/editors/libreoffice/libreoffice-7.2.6.2/extensions/test/ole/OleClient/ |
H A D | funcs.cxx | 178 Sequence<Any> seq2; in equalSequences() local 179 returned >>= seq2; in equalSequences() 187 returned >>= seq2; in equalSequences() 195 returned >>= seq2; in equalSequences() 203 returned >>= seq2; in equalSequences() 211 returned >>= seq2; in equalSequences() 219 returned >>= seq2; in equalSequences() 227 returned >>= seq2; in equalSequences() 235 returned >>= seq2; in equalSequences() 243 returned >>= seq2; in equalSequences() [all …]
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/dports/editors/libreoffice6/libreoffice-6.4.7.2/extensions/test/ole/OleClient/ |
H A D | funcs.cxx | 178 Sequence<Any> seq2; in equalSequences() local 179 returned >>= seq2; in equalSequences() 187 returned >>= seq2; in equalSequences() 195 returned >>= seq2; in equalSequences() 203 returned >>= seq2; in equalSequences() 211 returned >>= seq2; in equalSequences() 219 returned >>= seq2; in equalSequences() 227 returned >>= seq2; in equalSequences() 235 returned >>= seq2; in equalSequences() 243 returned >>= seq2; in equalSequences() [all …]
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/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | megamerger.c | 45 AjPSeq seq2; in main() local 57 seq2 = ajAcdGetSeq("bsequence"); in main() 64 ajSeqTrim(seq2); in main() 92 ajSeqDel(&seq2); in main() 138 s2 = ajSeqGetSeqCopyS(seq2); in megamerger_Merge() 158 ajSeqGetNameC(seq2), p->seq2start+1); in megamerger_Merge() 171 ajSeqGetNameC(seq2), p->seq2start); in megamerger_Merge() 231 ajSeqGetNameC(seq2), prev2end); in megamerger_Merge() 256 ajSeqGetNameC(seq2)); in megamerger_Merge() 318 ajSeqGetLen(seq2)); in megamerger_Merge() [all …]
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/dports/net/concourse-fly/concourse-6.7.1/vendor/github.com/aryann/difflib/ |
H A D | difflib.go | 66 func Diff(seq1, seq2 []string) (diff []DiffRecord) { 76 diffRes := compute(seq1[start:len(seq1)-end], seq2[start:len(seq2)-end]) 97 func HTMLDiff(seq1, seq2 []string) string { 100 for _, d := range Diff(seq1, seq2) { 131 for start < len(seq1) && start < len(seq2) && seq1[start] == seq2[start] { 134 i, j := len(seq1)-1, len(seq2)-1 135 for i > start && j > start && seq1[i] == seq2[j] { 157 matrix := intMatrix(len(seq1)+1, len(seq2)+1) 160 if seq1[len(seq1)-i] == seq2[len(seq2)-j] { 175 i, j := len(seq1), len(seq2) [all …]
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/dports/sysutils/helmfile/helmfile-0.138.7/vendor/github.com/aryann/difflib/ |
H A D | difflib.go | 66 func Diff(seq1, seq2 []string) (diff []DiffRecord) { 76 diffRes := compute(seq1[start:len(seq1)-end], seq2[start:len(seq2)-end]) 97 func HTMLDiff(seq1, seq2 []string) string { 100 for _, d := range Diff(seq1, seq2) { 131 for start < len(seq1) && start < len(seq2) && seq1[start] == seq2[start] { 134 i, j := len(seq1)-1, len(seq2)-1 135 for i > start && j > start && seq1[i] == seq2[j] { 157 matrix := intMatrix(len(seq1)+1, len(seq2)+1) 160 if seq1[len(seq1)-i] == seq2[len(seq2)-j] { 175 i, j := len(seq1), len(seq2) [all …]
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/dports/misc/concourse/concourse-6.7.2/vendor/github.com/aryann/difflib/ |
H A D | difflib.go | 66 func Diff(seq1, seq2 []string) (diff []DiffRecord) { 76 diffRes := compute(seq1[start:len(seq1)-end], seq2[start:len(seq2)-end]) 97 func HTMLDiff(seq1, seq2 []string) string { 100 for _, d := range Diff(seq1, seq2) { 131 for start < len(seq1) && start < len(seq2) && seq1[start] == seq2[start] { 134 i, j := len(seq1)-1, len(seq2)-1 135 for i > start && j > start && seq1[i] == seq2[j] { 157 matrix := intMatrix(len(seq1)+1, len(seq2)+1) 160 if seq1[len(seq1)-i] == seq2[len(seq2)-j] { 175 i, j := len(seq1), len(seq2) [all …]
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/dports/textproc/py-whoosh/Whoosh-2.7.4/src/whoosh/support/ |
H A D | levenshtein.py | 8 def levenshtein(seq1, seq2, limit=None): argument 13 thisrow = list(range(1, len(seq2) + 1)) + [0] 18 oneago, thisrow = thisrow, [0] * len(seq2) + [x + 1] 19 for y in xrange(len(seq2)): 22 subcost = oneago[y - 1] + (seq1[x] != seq2[y]) 28 return thisrow[len(seq2) - 1] 31 def damerau_levenshtein(seq1, seq2, limit=None): argument 36 thisrow = list(range(1, len(seq2) + 1)) + [0] 42 for y in xrange(len(seq2)): 49 and seq1[x - 1] == seq2[y] and seq1[x] != seq2[y]): [all …]
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/fragment_store/ |
H A D | example.sam | 2 @SQ SN:seq2 LN:1584 1633 EAS192_3:5:287:334:110 133 seq2 196 0 * = 196 0 GATGAATACTAAGATTGATGTAGCAGCTTTTGCAA .5+7)09<))&-&:3… 1737 EAS188_7:3:15:568:42 181 seq2 269 0 * = 269 0 TTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTATA !!!!!!!!!++++!!!!… 1741 EAS51_64:6:206:994:556 133 seq2 270 0 * = 270 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!… 1835 EAS51_64:7:104:965:517 133 seq2 333 0 * = 333 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN !!!!!!!!!!!!!!!… 2185 EAS139_11:7:53:458:581 133 seq2 583 0 * = 583 0 CTCAATTAATTGTTTTATAAAACCTGTGAGTTTTG <<<<<<<<<<<<<<<… 2196 EAS188_7:1:177:522:118 69 seq2 594 0 * = 594 0 TCTCAATTAATTGTTTTATAAAACCTGTGAGTTTT <<<<<<<<<<<<<<<<… 2200 EAS51_62:8:52:967:804 133 seq2 596 0 * = 596 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT ===============<… 2247 EAS1_105:1:141:415:738 69 seq2 624 0 * = 624 0 TTACCTAGTTGCTCTGTAGTCTCAATTAATTGTTT <<<<<<<<<<<<<<<<… 2538 EAS114_30:6:4:665:771 69 seq2 862 0 * = 862 0 GTGCTTTATCTGATATCAATGCCGATAAACTGCCT <<<<<<<<<<<<%<8<3… [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/ |
H A D | alnmerger.cpp | 251 if ( seq2 ) in x_Merge() 260 if ( seq2 ) in x_Merge() 270 if (seq2) { in x_Merge() 298 if ( seq2 ) in x_Merge() 334 if (seq2) { in x_Merge() 446 seq2 = match->m_AlnSeq2 = seq2->m_ExtraRow = row; in x_Merge() 449 seq2 = match->m_AlnSeq2 = seq2->m_ExtraRow; in x_Merge() 706 seq2 = match->m_AlnSeq2 = seq2->m_ExtraRow = row; in x_Merge() 709 seq2 = match->m_AlnSeq2 = seq2->m_ExtraRow; in x_Merge() 875 seq2 = seq2->m_ExtraRow; in x_SecondRowFits() [all …]
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