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/dports/audio/rkr-lv2/rkrlv2-beta_2-2-gd8c17d3/src/
H A Drakarrack.cxx7538 seq_1->value(rkr->efx_Sequence->getpar(0));
18660 seq_1->type(5);
18661 seq_1->box(FL_FLAT_BOX);
18662 seq_1->color((Fl_Color)178);
18664 seq_1->labeltype(FL_NORMAL_LABEL);
18665 seq_1->labelfont(0);
18666 seq_1->labelsize(10);
18668 seq_1->maximum(127);
18669 seq_1->step(1);
18673 seq_1->when(FL_WHEN_CHANGED);
[all …]
H A Drakarrack.fl8123 seq_1->value(rkr->efx_Sequence->getpar(0));
8187 Fl_Value_Slider seq_1 {
16154 seq_1->value(rkr->efx_Sequence->getpar(0));
16155 seq_1->redraw();
H A Drakarrack.h2684 SliderW *seq_1;
/dports/biology/flash/FLASH-1.2.11/
H A Dcombine_reads.c107 if (seq_1[i] == 'N' || seq_2[i] == 'N') { in compute_mismatch_stats()
110 if (seq_1[i] != seq_2[i]) { in compute_mismatch_stats()
195 seq_1 += 16, seq_2 += 16; in compute_mismatch_stats()
212 const char *_seq_1 = seq_1 - veclen; in compute_mismatch_stats()
232 if (seq_1[i] != seq_2[i]) { in compute_mismatch_stats()
361 *combined_seq++ = *seq_1++; in generate_combined_read()
367 if (*seq_1 == *seq_2) { in generate_combined_read()
370 *combined_seq = *seq_1; in generate_combined_read()
401 *combined_seq = *seq_1; in generate_combined_read()
410 *combined_seq = *seq_1; in generate_combined_read()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/dbindex_search/
H A Dsr_search.hpp56 const CSeqVector * seq_1; member
69 : seq_1( &seq ), seq_2( 0 ), num_res( nr ), in SSearchData()
81 : seq_1( &seq1 ), seq_2( &seq2 ), in SSearchData()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/dbindex_search/
H A Dsr_search_impl.hpp336 const CSeqVector & seq1 = *sdata.seq_1; in search()
646 const CSeqVector & seq = *sdata.seq_1; in search()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/asnval/TestRes.asnval/tests/test1/test-cases/
H A Dreject-sqn.golden1 ERROR: valid [SEQ_INST.MolNuclAcid] Bioseq.mol is type na BIOSEQ: lcl|seq_1: raw, na len= 336
2 … /environmental_sample DESCRIPTOR: BioSrc: Uncultured bacterium BIOSEQ: lcl|seq_1: raw, na len= 336
3 ERROR: valid [SEQ_DESCR.NoMolInfoFound] No Mol-info applies to this Bioseq BIOSEQ: lcl|seq_1: raw, …
7 …enetic code [1] or protein should be partial FEATURE: CDS: [lcl|seq_1:1-336] [lcl|seq_1: raw, na …
8 ERROR: valid [SEQ_FEAT.NoStop] Missing stop codon FEATURE: CDS: [lcl|seq_1:1-336] [lcl|seq_1: raw,…
9 … between CDS (code 1) and BioSource (code 0) FEATURE: CDS: [lcl|seq_1:1-336] [lcl|seq_1: raw, na …
10 …not packaged in nuc-prot set with nucleotide FEATURE: CDS: [lcl|seq_1:1-336] [lcl|seq_1: raw, na …
345 …on citation has no affiliation DESCRIPTOR: Pub: Bollin,C.J. (11-8-2012) BIOSEQ-SET: pop-set: seq_1
H A Dreject.sqn94 subname "seq_1" } } } } } } ,
99 str "seq_1" } ,
109 str ">seq_1" } } } } ,
169 str "seq_1" } } } } } } ,
3493 str "seq_1" ,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/test/test_cases/ReassignIds/
H A Dexample2.asn958 local str "6.seq_1",
961 tag str "q22.sqn/6.seq_1"
998 id local str "6.seq_1"
1597 product whole local str "6.seq_1",
H A Dexample2.ref958 local str "6.seq_1",
961 tag str "q22.sqn/6.seq_1"
998 id local str "6.seq_1"
1597 product whole local str "6.seq_1",
/dports/biology/ncbi-toolkit/ncbi/network/wwwblast/Src/
H A Dwblast2.c1611 …rx, Int2 ma, Int2 ms, BLAST_OptionsBlkPtr options, CharPtr seq_2, CharPtr seq_1, CharPtr one, Char… in PrintParam() argument
1690 if (seq_1 != NULL && *seq_1 != NULLB) { in PrintParam()
1692 for (s = seq_1; *s != '\0'; s++) { in PrintParam()
2082 CharPtr seq_1=NULL, seq_2=NULL, chptr; in Main() local
2359 seq_1 = seq1EntryData; in Main()
2378 if (seq_1 != NULL) { in Main()
2379 query_sep = FastaToSeqBuff(seq_1, &sq_1, !is_aa1); in Main()
2381 is_na1 = FastaCheckDna(seq_1); in Main()
/dports/biology/p5-TrimGalore/TrimGalore-0.6.5/
H A Dtrim_galore1679 my $seq_1 = <IN1>;
1688 if ($id_1 and $seq_1 and $l3_1 and $qual_1 and $id_2 and $seq_2 and $l3_2 and $qual_2){
1698 last unless ($id_1 and $seq_1 and $l3_1 and $qual_1);
1713 chomp $seq_1;
1720 …$seq_1 = substr($seq_1,$clip_r1); # starting after the sequences to be trimmed until the end of th…
1733 …$seq_1 = substr($seq_1,0,(length($seq_1) - $three_prime_clip_r1)); # starting after the sequences …
1747 my $n_count = Ncounter($seq_1);
1766 if ( (length($seq_1) < $length_cutoff) or (length($seq_2) < $length_cutoff) ){
1770 if ( length($seq_1) >= $length_read_1){ # read 1 is long enough
1772 print UNPAIRED1 "$seq_1\n";
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/journaled_set/
H A Dsequences.fasta17 >seq_1
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/manual/source/Tutorial/InputOutput/
H A Dsequences.fasta17 >seq_1
/dports/biology/seqan1/seqan-1.3.1/demos/
H A Dswift_verification.cpp22 TSequence seq_1 = String<Dna, FileReader<Fasta> >("../../demos/sequence_2.fa"); in main() local
26 TInfix infix_1 = infix(seq_1, 1029, 1163); in main()
37 assignSource(row(align, 1), seq_1); in main()
63 extendSeed(seed, 5*(-penalty), scoreMatrix, seq_0, seq_1, 2, GappedXDrop()); in main()
69 appendValue(leftExtensions, infix(seq_1, leftPosition(seed, 1), locAliBegin_1)); in main()
87 appendValue(rightExtensions, infix(seq_1, locAliEnd_1, rightPosition(seed, 1) + 1)); in main()
/dports/cad/cascade-compiler/cascade-f4f7ae8bd1dd379790c0e58c286df90b8d1cdcde/test/regression/
H A Dsimple.cc336 TEST(simple, seq_1) { in TEST() argument
/dports/databases/mariadb103-client/mariadb-10.3.34/storage/sequence/mysql-test/sequence/
H A Dsimple.result35 show create table seq_1;
36 ERROR 42S02: Table 'test.seq_1' doesn't exist
H A Dsimple.test21 show create table seq_1;
/dports/databases/mariadb103-server/mariadb-10.3.34/storage/sequence/mysql-test/sequence/
H A Dsimple.result35 show create table seq_1;
36 ERROR 42S02: Table 'test.seq_1' doesn't exist
H A Dsimple.test21 show create table seq_1;
/dports/databases/mariadb104-client/mariadb-10.4.24/storage/sequence/mysql-test/sequence/
H A Dsimple.result35 show create table seq_1;
36 ERROR 42S02: Table 'test.seq_1' doesn't exist
H A Dsimple.test21 show create table seq_1;
/dports/databases/mariadb104-server/mariadb-10.4.24/storage/sequence/mysql-test/sequence/
H A Dsimple.result35 show create table seq_1;
36 ERROR 42S02: Table 'test.seq_1' doesn't exist
H A Dsimple.test21 show create table seq_1;
/dports/databases/mariadb105-client/mariadb-10.5.15/mysql-test/suite/binlog/r/
H A Dbinlog_empty_xa_prepared.result1 CREATE TEMPORARY SEQUENCE seq_1;
10 DROP TEMPORARY SEQUENCE seq_1;
12 ALTER SEQUENCE seq_1 INCREMENT BY 1;
23 master-bin.000001 # Query # # use `test`; CREATE TEMPORARY SEQUENCE seq_1

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