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Searched refs:seqmap (Results 1 – 25 of 38) sorted by relevance

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/dports/sysutils/eclat/eclat-2.0/lib/
H A Dseqmap.c20 struct seqmap { struct
51 struct seqmap *seqmap = data; in seqmap_free() local
54 if (seqmap->maps) { in seqmap_free()
65 free(seqmap); in seqmap_free()
71 struct seqmap *seqmap, **return_seqmap = data; in seqmap_config() local
74 seqmap = grecs_zalloc(sizeof(*seqmap)); in seqmap_config()
82 (seqmap->nmaps = grecs_list_size(seqmap->namelist)) == 0) { in seqmap_config()
87 seqmap->maps = grecs_calloc(seqmap->nmaps, sizeof(seqmap->maps[0])); in seqmap_config()
95 struct seqmap *seqmap = data; in seqmap_open() local
118 struct seqmap *seqmap = data; in seqmap_close() local
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H A DMakefile.am33 seqmap.c
H A DMakefile.in123 filemap.c nullmap.c ldapmap.c seqmap.c
127 nullmap.$(OBJEXT) $(am__objects_2) seqmap.$(OBJEXT)
330 seqmap.c
447 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/seqmap.Po@am__quote@
/dports/multimedia/obs-studio/obs-studio-27.1.3/deps/w32-pthreads/tests/
H A Dsequence1.c94 static UINT64 seqmap[NUMTHREADS+2]; variable
99 seqmap[(int)pthread_getunique_np(pthread_self())] = 1; in func()
117 seqmap[i] = 0; in main()
125 seqmap[(int)pthread_getunique_np(pthread_self())] = 1; in main()
135 assert(seqmap[0] == 0); in main()
138 assert(seqmap[i] == 1); in main()
/dports/biology/mothur/mothur-1.46.1/source/datastructures/
H A Dfastamap.cpp34 itName = seqmap.find(name); in readFastaFile()
35 if (itName == seqmap.end()) { seqmap[name] = sequence; } in readFastaFile()
90 itName = seqmap.find(name); in readFastaFile()
91 if (itName == seqmap.end()) { seqmap[name] = sequence; } in readFastaFile()
94 seqmap[name] = sequence; in readFastaFile()
128 map<string,string>::iterator it = seqmap.find(name); in getSequence()
129 if (it == seqmap.end()) { return "not found"; } in getSequence()
145 seqmap[name] = seq; in push_back()
H A Dfastamap.h45 map<string, string> seqmap; //name, sequence - uncondensed representation of file variable
/dports/net/fping/fping-5.0/src/
H A DMakefile.in106 am__fping_SOURCES_DIST = fping.c seqmap.c socket4.c fping.h options.h \
107 seqmap.h optparse.c optparse.h socket6.c
109 am_fping_OBJECTS = fping-fping.$(OBJEXT) fping-seqmap.$(OBJEXT) \
278 fping_SOURCES = fping.c seqmap.c socket4.c fping.h options.h seqmap.h \
370 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/fping-seqmap.Po@am__quote@
402 fping-seqmap.o: seqmap.c
403 …CFLAGS) -MT fping-seqmap.o -MD -MP -MF $(DEPDIR)/fping-seqmap.Tpo -c -o fping-seqmap.o `test -f 's…
404 @am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/fping-seqmap.Tpo $(DEPDIR)/fping-seqmap.Po
409 fping-seqmap.obj: seqmap.c
410 …LAGS) $(fping_CFLAGS) $(CFLAGS) -MT fping-seqmap.obj -MD -MP -MF $(DEPDIR)/fping-seqmap.Tpo -c -o …
[all …]
H A DMakefile.am5 fping_SOURCES = fping.c seqmap.c socket4.c fping.h options.h seqmap.h optparse.c optparse.h
/dports/japanese/w3m/w3m-2b59b9e/
H A Danchor.c225 reseq_anchor0(AnchorList *al, short *seqmap) in reseq_anchor0() argument
236 a->hseq = seqmap[a->hseq]; in reseq_anchor0()
246 short *seqmap; in reseq_anchor() local
263 seqmap = NewAtom_N(short, n); in reseq_anchor()
266 seqmap[i] = i; in reseq_anchor()
278 seqmap[n] = seqmap[a1->hseq]; in reseq_anchor()
280 seqmap[j]++; in reseq_anchor()
282 ml = putHmarker(ml, a->start.line, a->start.pos, seqmap[n]); in reseq_anchor()
289 buf->hmarklist->marks[i].pos, seqmap[i]); in reseq_anchor()
293 reseq_anchor0(buf->href, seqmap); in reseq_anchor()
[all …]
/dports/japanese/w3m-img/w3m-2b59b9e/
H A Danchor.c225 reseq_anchor0(AnchorList *al, short *seqmap) in reseq_anchor0() argument
236 a->hseq = seqmap[a->hseq]; in reseq_anchor0()
246 short *seqmap; in reseq_anchor() local
263 seqmap = NewAtom_N(short, n); in reseq_anchor()
266 seqmap[i] = i; in reseq_anchor()
278 seqmap[n] = seqmap[a1->hseq]; in reseq_anchor()
280 seqmap[j]++; in reseq_anchor()
282 ml = putHmarker(ml, a->start.line, a->start.pos, seqmap[n]); in reseq_anchor()
289 buf->hmarklist->marks[i].pos, seqmap[i]); in reseq_anchor()
293 reseq_anchor0(buf->href, seqmap); in reseq_anchor()
[all …]
/dports/www/w3m-img/w3m-2b59b9e/
H A Danchor.c225 reseq_anchor0(AnchorList *al, short *seqmap) in reseq_anchor0() argument
236 a->hseq = seqmap[a->hseq]; in reseq_anchor0()
246 short *seqmap; in reseq_anchor() local
263 seqmap = NewAtom_N(short, n); in reseq_anchor()
266 seqmap[i] = i; in reseq_anchor()
278 seqmap[n] = seqmap[a1->hseq]; in reseq_anchor()
280 seqmap[j]++; in reseq_anchor()
282 ml = putHmarker(ml, a->start.line, a->start.pos, seqmap[n]); in reseq_anchor()
289 buf->hmarklist->marks[i].pos, seqmap[i]); in reseq_anchor()
293 reseq_anchor0(buf->href, seqmap); in reseq_anchor()
[all …]
/dports/www/w3m/w3m-2b59b9e/
H A Danchor.c225 reseq_anchor0(AnchorList *al, short *seqmap) in reseq_anchor0() argument
236 a->hseq = seqmap[a->hseq]; in reseq_anchor0()
246 short *seqmap; in reseq_anchor() local
263 seqmap = NewAtom_N(short, n); in reseq_anchor()
266 seqmap[i] = i; in reseq_anchor()
278 seqmap[n] = seqmap[a1->hseq]; in reseq_anchor()
280 seqmap[j]++; in reseq_anchor()
282 ml = putHmarker(ml, a->start.line, a->start.pos, seqmap[n]); in reseq_anchor()
289 buf->hmarklist->marks[i].pos, seqmap[i]); in reseq_anchor()
293 reseq_anchor0(buf->href, seqmap); in reseq_anchor()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/
H A Dseq_map_ci.cpp204 const CSeqMap& seqmap, in CSeqMap_CI() argument
214 if ( &info.x_GetSeqMap() != &seqmap || in CSeqMap_CI()
778 CSeqMap_I::CSeqMap_I(CRef<CSeqMap>& seqmap, in CSeqMap_I() argument
782 : CSeqMap_CI(seqmap, in CSeqMap_I()
786 m_SeqMap(seqmap) in CSeqMap_I()
791 CSeqMap_I::CSeqMap_I(CRef<CSeqMap>& seqmap, in CSeqMap_I() argument
795 : CSeqMap_CI(seqmap, in CSeqMap_I()
799 m_SeqMap(seqmap) in CSeqMap_I()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/
H A Dseq_map_ci.cpp204 const CSeqMap& seqmap, in CSeqMap_CI() argument
214 if ( &info.x_GetSeqMap() != &seqmap || in CSeqMap_CI()
778 CSeqMap_I::CSeqMap_I(CRef<CSeqMap>& seqmap, in CSeqMap_I() argument
782 : CSeqMap_CI(seqmap, in CSeqMap_I()
786 m_SeqMap(seqmap) in CSeqMap_I()
791 CSeqMap_I::CSeqMap_I(CRef<CSeqMap>& seqmap, in CSeqMap_I() argument
795 : CSeqMap_CI(seqmap, in CSeqMap_I()
799 m_SeqMap(seqmap) in CSeqMap_I()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/
H A Dseq_map_ci.hpp263 CSeqMap_CI(const CConstRef<CSeqMap>& seqmap,
267 CSeqMap_CI(const CConstRef<CSeqMap>& seqmap,
340 const CSeqMap& seqmap, size_t index,
416 CSeqMap_I(CRef<CSeqMap>& seqmap,
420 CSeqMap_I(CRef<CSeqMap>& seqmap,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/
H A Dseq_map_ci.hpp263 CSeqMap_CI(const CConstRef<CSeqMap>& seqmap,
267 CSeqMap_CI(const CConstRef<CSeqMap>& seqmap,
340 const CSeqMap& seqmap, size_t index,
416 CSeqMap_I(CRef<CSeqMap>& seqmap,
420 CSeqMap_I(CRef<CSeqMap>& seqmap,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/
H A Dbioseqgaps_ci.cpp199 const CSeqMap & seqmap = seqvec.GetSeqMap(); in x_FindNextGapOnBioseq() local
220 seqmap.FindSegment( curr_pos, &bioseq_h.GetScope() ); in x_FindNextGapOnBioseq()
H A Dseq_trimmer.cpp585 const CSeqMap & seqmap = seqvec.GetSeqMap(); in x_CountAmbigInRange() local
589 seqmap.FindSegment( in x_CountAmbigInRange()
710 const CSeqMap & seqmap = bioseq_handle.GetSeqMap(); in x_SliceBioseq() local
711 CSeqMap_CI seqmap_ci = seqmap.ResolvedRangeIterator( in x_SliceBioseq()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/
H A Dbioseqgaps_ci.cpp199 const CSeqMap & seqmap = seqvec.GetSeqMap(); in x_FindNextGapOnBioseq() local
220 seqmap.FindSegment( curr_pos, &bioseq_h.GetScope() ); in x_FindNextGapOnBioseq()
H A Dseq_trimmer.cpp585 const CSeqMap & seqmap = seqvec.GetSeqMap(); in x_CountAmbigInRange() local
589 seqmap.FindSegment( in x_CountAmbigInRange()
710 const CSeqMap & seqmap = bioseq_handle.GetSeqMap(); in x_SliceBioseq() local
711 CSeqMap_CI seqmap_ci = seqmap.ResolvedRangeIterator( in x_SliceBioseq()
/dports/sysutils/eclat/eclat-2.0/tests/
H A Dseqmap.at18 AT_KEYWORDS([map seqmap])
H A DMakefile.am80 seqmap.at\
H A Dtestsuite.at92 m4_include([seqmap.at])
/dports/games/alephone/alephone-release-20190331/Source_Files/RenderMain/
H A DOGL_Model_Def.cpp712 BOOST_FOREACH(InfoTree seqmap, root.children_named("seq_map")) in parse_mml_opengl_model()
715 if (!seqmap.read_indexed("seq", e.Sequence, MAXIMUM_SHAPES_PER_COLLECTION)) in parse_mml_opengl_model()
717 if (!seqmap.read_indexed("model_seq", e.ModelSequence, MAXIMUM_SHAPES_PER_COLLECTION, true)) in parse_mml_opengl_model()
/dports/security/tcpcrypt/tcpcrypt-0.5/src/
H A Dtcpcrypt.c1212 struct tc_seqmap *seqmap, sm_cb cb) in get_seq_off() argument
1214 struct tc_seq *s = seqmap_find(seqmap, seq, cb); in get_seq_off()
1223 struct tc_seqmap *seqmap) in add_seq() argument
1231 s = seqmap_find(seqmap, seq, seqmap_find_end); in add_seq()
1234 s = &seqmap->sm_seq[seqmap->sm_idx]; in add_seq()
1236 if (seqmap->sm_idx != 0 in add_seq()
1246 rtr = seqmap_find(seqmap, seq, seqmap_find_start); in add_seq()
1260 seqmap->sm_idx = (seqmap->sm_idx + 1) % MAX_SEQMAP; in add_seq()
1261 s = &seqmap->sm_seq[seqmap->sm_idx]; in add_seq()

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