sequence_col_specs (reference) in projects: dports

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Searched refs:sequence_col_specs (Results 1 – 12 of 12) sorted by last modified time

/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/
H A D	CSRA1_ReadCollection.c	239 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReadGroups() 261 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionHasReadGroup() 287 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReadGroup() 453 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReads() 491 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetRead() 508 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReadCount() 584 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReadRange()
H A D	NGS_FragmentBlobIterator.c	`89 TRY ( ret -> curs = NGS_CursorMake ( ctx, tbl, sequence_col_specs, seq_NUM_COLS ) ) in NGS_FragmentBlobIteratorMake()`
H A D	SRA_DB_ReadCollection.c	121 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReadGroups() 140 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionHasReadGroup() 164 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReadGroup() 248 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReads() 283 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetRead() 302 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReadCount() 314 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReadRange()
H A D	SRA_Read.c	`59 const char * sequence_col_specs [] = variable`
H A D	SRA_Read.h	`69 extern const char * sequence_col_specs [];`
H A D	SRA_ReadCollection.c	101 …TRY ( const NGS_Cursor * curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COL… in SRA_ReadCollectionGetReadGroups() 120 … ON_FAIL ( self -> curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COLS ) ) in SRA_ReadCollectionHasReadGroup() 146 … ON_FAIL ( self -> curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COLS ) ) in SRA_ReadCollectionGetReadGroup() 238 …TRY ( const NGS_Cursor * curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COL… in SRA_ReadCollectionGetReads() 273 … ON_FAIL ( self -> curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COLS ) ) in SRA_ReadCollectionGetRead() 292 … ON_FAIL ( self -> curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COLS ) ) in SRA_ReadCollectionGetReadCount() 305 …TRY ( const NGS_Cursor * curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COL… in SRA_ReadCollectionGetReadRange()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/
H A D	CSRA1_ReadCollection.c	239 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReadGroups() 261 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionHasReadGroup() 287 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReadGroup() 453 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReads() 491 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetRead() 508 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReadCount() 584 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in CSRA1_ReadCollectionGetReadRange()
H A D	NGS_FragmentBlobIterator.c	`89 TRY ( ret -> curs = NGS_CursorMake ( ctx, tbl, sequence_col_specs, seq_NUM_COLS ) ) in NGS_FragmentBlobIteratorMake()`
H A D	SRA_DB_ReadCollection.c	121 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReadGroups() 140 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionHasReadGroup() 164 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReadGroup() 248 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReads() 283 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetRead() 302 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReadCount() 314 … NGS_CursorMakeDb ( ctx, self -> db, self -> run_name, "SEQUENCE", sequence_col_specs, seq_NUM_COL… in SRA_DB_ReadCollectionGetReadRange()
H A D	SRA_Read.c	`59 const char * sequence_col_specs [] = variable`
H A D	SRA_Read.h	`69 extern const char * sequence_col_specs [];`
H A D	SRA_ReadCollection.c	101 …TRY ( const NGS_Cursor * curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COL… in SRA_ReadCollectionGetReadGroups() 120 … ON_FAIL ( self -> curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COLS ) ) in SRA_ReadCollectionHasReadGroup() 146 … ON_FAIL ( self -> curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COLS ) ) in SRA_ReadCollectionGetReadGroup() 238 …TRY ( const NGS_Cursor * curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COL… in SRA_ReadCollectionGetReads() 273 … ON_FAIL ( self -> curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COLS ) ) in SRA_ReadCollectionGetRead() 292 … ON_FAIL ( self -> curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COLS ) ) in SRA_ReadCollectionGetReadCount() 305 …TRY ( const NGS_Cursor * curs = NGS_CursorMake ( ctx, self -> tbl, sequence_col_specs, seq_NUM_COL… in SRA_ReadCollectionGetReadRange()