| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/serial/ |
| H A D | objistr.cpp | 874 const string& tname = typeInfo->GetName(); in SkipFileHeader() local
875 if ( !name.empty() && !tname.empty() && name != tname ) { in SkipFileHeader()
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| H A D | objistrjson.cpp | 472 const string& tname = TopFrame().GetTypeInfo()->GetName(); in ReadFileHeader() local
473 if (tname.empty()) { in ReadFileHeader()
476 if (str != tname) { in ReadFileHeader()
477 if (str == NStr::Replace(tname,"-","_")) { in ReadFileHeader()
478 return tname; in ReadFileHeader()
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| H A D | objistrxml.cpp | 632 const string& tname = top.GetTypeInfo()->GetName(); in ReadFileHeader() local
633 if ( !typeName.empty() && !tname.empty() && typeName != tname ) { in ReadFileHeader()
635 if (tmp == tname) { in ReadFileHeader()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/compress/api/ |
| H A D | tar.cpp | 900 const char* tname = 0; in s_DumpHeader() local
910 if (!tname) in s_DumpHeader()
948 tname = "directory"; in s_DumpHeader()
954 tname = "FIFO"; in s_DumpHeader()
1048 dump += (" [" + string(tname ? tname : "reserved") in s_DumpHeader()
1071 tname = "ustar"; in s_DumpHeader()
1078 tname = "posix"; in s_DumpHeader()
1082 tname = "star"; in s_DumpHeader()
1085 tname = 0; in s_DumpHeader()
1089 if (tname) { in s_DumpHeader()
[all …]
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| /dports/biology/ncbi-toolkit/ncbi/asnlib/ |
| H A D | asnprint.c | 303 Char tname[100], pname[100]; in AsnTxtWriteEx() local
306 if (GetXMLModuleName(atp2, tname) == NULL) in AsnTxtWriteEx()
308 StringMove(tname, "Not_Found"); in AsnTxtWriteEx()
310 MakeXMLPublicName(pname, tname); in AsnTxtWriteEx()
313 xmlname, pname, AsnGetXMLmodulePrefix(), tname); in AsnTxtWriteEx()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | searchv.c | 451 Char buffer[32], tname[1024]; in PlotSites() local
472 StrCpy (tname, name); in PlotSites()
473 if (StrLen (tname) > 10) in PlotSites()
474 tname[10] = '\0'; in PlotSites()
475 sprintf (buffer, "%10s %6ld", tname, (long) count); in PlotSites()
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| /dports/biology/ncbi-toolkit/ncbi/network/taxon1/taxon2/ |
| H A D | txcproc.c | 2380 char tname[120]; in tax_SSgetNodes() local
2407 strncpy(tname, sname, 116); in tax_SSgetNodes()
2408 tname[116]= '\0'; in tax_SSgetNodes()
2409 parfmt.maxlength= strlen(tname); in tax_SSgetNodes()
2410 if(ct_param(cmd, &parfmt, tname, parfmt.maxlength, CS_UNUSED) != CS_SUCCEED) { in tax_SSgetNodes()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/axf/ |
| H A D | ref-preserve_qual.c | 164 char const * tname = isPrimary ? "PRIMARY_ALIGNMENT" : "SECONDARY_ALIGNMENT"; in OpenAlignCursor() local
166 rc_t rc = VDatabaseOpenTableRead( db, &atbl, tname ); in OpenAlignCursor()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/schema/ |
| H A D | ASTBuilder-tbl.cpp | 117 m_builder . GetSchema () -> tname, in SetName()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/vdb-sqlite/ |
| H A D | sqlite3.c | 95410 Token tname;
95431 tname.z = (char*)zCsr;
95432 tname.n = len;
95444 zRet = sqlite3MPrintf(db, "%.*s\"%w\"%s", (int)(((u8*)tname.z) - zSql),
95445 zSql, zTableName, tname.z+tname.n);
95532 Token tname;
95555 tname.z = (char*)zCsr;
95556 tname.n = len;
95585 zRet = sqlite3MPrintf(db, "%.*s\"%w\"%s", (int)(((u8*)tname.z) - zSql),
95586 zSql, zTableName, tname.z+tname.n);
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/vdb/ |
| H A D | schema-priv.h | 290 Vector tname; member
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| H A D | schema-tbl.c | 2877 rc = VectorAppend ( & self -> tname, & name -> cid . id, name ); in table_declaration()
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| H A D | schema.c | 596 VectorWhack ( & self -> tname, SNameOverloadWhack, NULL ); in VSchemaDestroy()
739 VectorInit ( & schema -> tname, 0, 16 ); in VSchemaMake()
754 rc = SNameOverloadVectorCopy ( & schema -> scope, & dad -> tname, & schema -> tname ); in VSchemaMake()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/schema/ |
| H A D | AST_Fixture.cpp | 175 Token tname ( IDENTIFIER_1_0, token . c_str () ); in MakeFqn() local
176 ret -> AddNode ( & tname ); in MakeFqn()
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| H A D | wb-test-schema-table.cpp | 162 REQUIRE_EQ ( ( const void * ) ovl, ( const void * ) VectorGet ( & GetSchema () -> tname, 0 ) ); in FIXTURE_TEST_CASE()
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| /dports/biology/p5-AcePerl/AcePerl-1.92/Ace/Sequence/ |
| H A D | Homol.pm | 14 my ($pack,$tclass,$tname,$db,$start,$end) = @_;
15 return unless my $obj = $db->class->new($tclass,$tname,$db,1);
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| /dports/biology/p5-Bio-Graphics/Bio-Graphics-2.40/lib/Bio/Graphics/Wiggle/ |
| H A D | Loader.pm | 612 my $tname = $self->{trackname} || 'track';
614 my $path = File::Spec->catfile($self->{base},"$tname\_$current_track.$seqid.$ts.wib");
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| /dports/biology/p5-Bio-Phylo/Bio-Phylo-v2.0.1/lib/Bio/Phylo/Matrices/ |
| H A D | MatrixRole.pm | 1598 my $tname = $taxon1->get_name;
1602 $logger->info(sprintf $tmpl,$tname,$mname);
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| /dports/biology/plink/plink-ng-79b2df8c/2.0/include/ |
| H A D | plink2_base.h | 3061 struct tname { \
3062 tname() {} \
3064 tname(const tname& source) : value_(source.value_) {} \
3074 tname& operator|=(const tname ## _PLINK2_BASE_DO_NOT_USE__ rhs) { \
3079 tname& operator&=(const tname ## _PLINK2_BASE_DO_NOT_USE__ rhs) { \
3089 tname& operator=(const tname& rhs) = default; \
3114 struct tname { \
3115 tname() {} \
3117 tname(const tname& source) : value_(source.value_) {} \
3142 tname& operator=(const tname& rhs) = default; \
[all …]
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| /dports/biology/py-biopython/biopython-1.79/BioSQL/ |
| H A D | DBUtils.py | 28 def tname(self, table): member in Generic_dbutils
38 table = self.tname(table)
106 table = self.tname(table)
113 table = self.tname(table)
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/coretype/ |
| H A D | tree.py | 1235 tname = random.sample(names_library, 1)[0]
1237 tname = names_library.pop()
1239 tname = ''.join(next(avail_names))
1240 n.name = tname
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/tools/ete_build_lib/ |
| H A D | master_task.py | 77 cls.tname,
86 cls.tname,
95 cls.tname,
103 cls.tname,
118 print("Name:", self.tname)
148 self.tname = task_name
579 subtype=task.ttype, name=task.tname)
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| H A D | scheduler.py | 286 …print('\t'.join([task.tname, task.taskid, j.jobname, j.jobid, j.get_launch_cmd()]), file=CMD_LOGGE…
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| H A D | visualize.py | 88 for tname in TRACKED_CLADES:
89 if hasattr(node, "named_lineage") and tname in node.named_lineage:
90 linF = TextFace(tname, fsize=10, fgcolor='white')
93 linF.background.color = lin2color[tname]
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| /dports/biology/py-ete3/ete3-3.1.2/ete3/tools/ete_build_lib/workflow/ |
| H A D | genetree.py | 85 clean_alg_type=task.tname,
93 alg_type=task.tname,
100 tree_type=task.tname,
108 modeltester_type=task.tname,
113 n.add_features(treemerger_type=task.tname,
|