| /dports/biology/bwa/bwa-0.7.17/ |
| H A D | ksw.c | 653 kseq_t *kst, *ksq; in main() local
682 fpq = xzopen(argv[optind+1], "r"); ksq = kseq_init(fpq); in main()
684 while (kseq_read(ksq) > 0) { in main()
687 for (i = 0; i < (int)ksq->seq.l; ++i) ksq->seq.s[i] = seq_nt4_table[(int)ksq->seq.s[i]]; in main()
689 if ((int)ksq->seq.m > max_rseq) { in main()
690 max_rseq = ksq->seq.m; in main()
693 for (i = 0, j = ksq->seq.l - 1; i < (int)ksq->seq.l; ++i, --j) in main()
694 rseq[j] = ksq->seq.s[i] == 4? 4 : 3 - ksq->seq.s[i]; in main()
699 …r = ksw_align(ksq->seq.l, (uint8_t*)ksq->seq.s, kst->seq.l, (uint8_t*)kst->seq.s, 5, mat, gapo, ga… in main()
705 …%s\t%d\t%d\t%d\t%d\t%d\n", kst->name.s, r.tb, r.te+1, ksq->name.s, (int)ksq->seq.l - r.qb, (int)ks… in main()
[all …]
|
| /dports/www/h2o-devel/h2o-dcc7134/deps/klib/ |
| H A D | ksw.c | 571 kseq_t *kst, *ksq; in main() local
600 fpq = gzopen(argv[optind+1], "r"); ksq = kseq_init(fpq); in main()
602 while (kseq_read(ksq) > 0) { in main()
605 for (i = 0; i < (int)ksq->seq.l; ++i) ksq->seq.s[i] = seq_nt4_table[(int)ksq->seq.s[i]]; in main()
607 if ((int)ksq->seq.m > max_rseq) { in main()
608 max_rseq = ksq->seq.m; in main()
611 for (i = 0, j = ksq->seq.l - 1; i < (int)ksq->seq.l; ++i, --j) in main()
612 rseq[j] = ksq->seq.s[i] == 4? 4 : 3 - ksq->seq.s[i]; in main()
617 …r = ksw_align(ksq->seq.l, (uint8_t*)ksq->seq.s, kst->seq.l, (uint8_t*)kst->seq.s, 5, mat, gapo, ga… in main()
623 …%s\t%d\t%d\t%d\t%d\t%d\n", kst->name.s, r.tb, r.te+1, ksq->name.s, (int)ksq->seq.l - r.qb, (int)ks… in main()
[all …]
|
| /dports/www/flexget/Flexget-3.2.18/flexget/tests/cassettes/ |
| H A D | test_thetvdb.TestTVDBExpire.test_expire_no_check | 187 ksq+QIUVpb84Fkh56kTxLuMgtGu7ueuD0hV4WR1Fq4aA3cq6kXRLFaZE90hZfrTFk6Ar0Z+IgEJT
|
| /dports/editors/emacs-devel/emacs-4d1968b/leim/MISC-DIC/ |
| H A D | ziranma.cin | 3188 ksq' ��
3189 ksq' ��
3190 ksq' ��
3191 ksq' ��
|
| /dports/net-p2p/bazarr/bazarr-1.0.2/libs/babelfish/data/ |
| H A D | iso-639-3.tab | 3279 ksq I L Kwaami
|
| /dports/editors/texstudio/texstudio-4.1.2/utilities/dictionaries/ |
| H A D | gl_GL-Galician.dic | 119413 ksq
|
| /dports/astro/weather/weather-2.4.2/ |
| H A D | airports | 5475 [ksq]
|
| /dports/math/py-heyoka/heyoka.py-0.16.0/doc/notebooks/ |
| H A D | The Maxwell-Boltzmann distribution.ipynb | 48862 "a/Di/AI0rl89zWOZmZkhNvGvtWp1AmBmZq6tTKMnyzJCQkLw5s0b0SlERssvoAx+O6nCnmvA+ksq\\\n",
|
| /dports/graphics/gmt/gmt-6.3.0/src/ |
| H A D | trend2d.c | 251 double k, ksq, rr; in trend2d_recompute_weights() local
266 ksq = k * k; in trend2d_recompute_weights()
270 data[i].w = (rr <= k) ? 1.0 : (2*k/rr) - (ksq/(rr*rr) ); /* This is really w-squared */ in trend2d_recompute_weights()
|
| H A D | trend1d.c | 292 double k, ksq, rr; in trend1d_recompute_weights() local
307 ksq = k * k; in trend1d_recompute_weights()
311 data[i].w = (rr <= k) ? 1.0 : (2*k/rr) - (ksq/(rr*rr) ); /* This is really w-squared */ in trend1d_recompute_weights()
|
| /dports/security/suricata/suricata-6.0.4/src/ |
| H A D | app-layer-dnp3-objects.h | 1330 uint32_t ksq; member
1342 uint32_t ksq; member
1393 uint32_t ksq; member
1400 uint32_t ksq; member
|
| H A D | app-layer-dnp3-objects.c | 7990 if (!DNP3ReadUint32(buf, len, &object->ksq)) { in DNP3DecodeObjectG120V5()
8088 if (!DNP3ReadUint24(buf, len, &object->ksq)) { in DNP3DecodeObjectG120V6()
8550 if (!DNP3ReadUint32(buf, len, &object->ksq)) { in DNP3DecodeObjectG120V12()
8619 if (!DNP3ReadUint32(buf, len, &object->ksq)) { in DNP3DecodeObjectG120V13()
|
| H A D | output-json-dnp3-objects.c | 1566 jb_set_uint(js, "ksq", data->ksq); in OutputJsonDNP3SetItem()
1586 jb_set_uint(js, "ksq", data->ksq); in OutputJsonDNP3SetItem()
1690 jb_set_uint(js, "ksq", data->ksq); in OutputJsonDNP3SetItem()
1702 jb_set_uint(js, "ksq", data->ksq); in OutputJsonDNP3SetItem()
|
| H A D | util-lua-dnp3-objects.c | 3236 lua_pushinteger(luastate, data->ksq); in DNP3PushPoint()
3266 lua_pushinteger(luastate, data->ksq); in DNP3PushPoint()
3386 lua_pushinteger(luastate, data->ksq); in DNP3PushPoint()
3403 lua_pushinteger(luastate, data->ksq); in DNP3PushPoint()
|
| /dports/net/ndpi/nDPI-92a1be2/src/lib/ |
| H A D | ndpi_content_match.c.inc | 9626 …j", "rsz", "nbh", "nuw", "ydm", "waj", "bsk", "xtn", "mnd", "jri", "vhs", "ksq", "sdv", "dfs", "zn…
|
| /dports/biology/ugene/ugene-40.1/data/snp_scripts/ |
| H A D | pdb_uniprot_chain_map.lst.2 | 25807 1ksq A Q14766
96365 2ksq A P11076
164106 3ksq A Q04631
164107 3ksq B Q02293
|
| /dports/misc/iso-codes/iso-codes-59767ed869f3952575f7d0f639a290a4c4b315e5/iso_639-3/ |
| H A D | gez.po | 16441 #. Name for ksq
|
| H A D | id.po | 15417 #. Name for ksq
|
| H A D | is.po | 15479 #. Name for ksq
|
| H A D | it.po | 15406 #. Name for ksq
|
| H A D | ko.po | 16532 #. Name for ksq
|
| H A D | lv.po | 16502 #. Name for ksq
|
| H A D | mk.po | 16505 #. Name for ksq
|
| H A D | mn.po | 17087 #. Name for ksq
|
| H A D | nb.po | 16886 #. Name for ksq
|