| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
| H A D | link_cds_mrna.cpp | 225 …for (CBioseq::TAnnot::iterator annot_it = bioseq.SetAnnot().begin(); bioseq.SetAnnot().end() != an… in LinkCDSmRNAbyLabelAndLocation() local
240 …for (CBioseq::TAnnot::iterator annot_it = bioseq.SetAnnot().begin(); bioseq.SetAnnot().end() != an… in LinkCDSmRNAbyLabelAndLocation() local
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| H A D | external_annots.cpp | 93 CAnnot_CI annot_it(CFeat_CI(bsh, sel)); in x_AddAnnotations() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
| H A D | link_cds_mrna.cpp | 225 …for (CBioseq::TAnnot::iterator annot_it = bioseq.SetAnnot().begin(); bioseq.SetAnnot().end() != an… in LinkCDSmRNAbyLabelAndLocation() local
240 …for (CBioseq::TAnnot::iterator annot_it = bioseq.SetAnnot().begin(); bioseq.SetAnnot().end() != an… in LinkCDSmRNAbyLabelAndLocation() local
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| H A D | external_annots.cpp | 93 CAnnot_CI annot_it(CFeat_CI(bsh, sel)); in x_AddAnnotations() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/test/objmgr/ |
| H A D | test_objmgr_data.cpp | 554 CAnnot_CI annot_it(handle, sel); in Thread_Run() local
614 CAnnot_CI annot_it(scope, loc, sel); in Thread_Run() local
639 CAnnot_CI annot_it(feat_it); in Thread_Run() local
660 CAnnot_CI annot_it(handle); in Thread_Run() local
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| H A D | test_objmgr_data_mt.cpp | 474 CAnnot_CI annot_it(handle.GetScope(), loc, sel); in Thread_Run() local
503 CAnnot_CI annot_it(handle, sel); in Thread_Run() local
528 CAnnot_CI annot_it(feat_it); in Thread_Run() local
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| H A D | test_edit_saver.cpp | 375 CSeq_annot_CI annot_it(handle); in s_AddFeat() local
414 CSeq_annot_CI annot_it(handle.GetParentEntry()); in s_RemoveAnnot() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/table2asn/ |
| H A D | feature_table_reader.cpp | 1100 auto annot_it = in _ParseCdregions() local
1650 …for (CBioseq::TAnnot::iterator annot_it = bioseq.SetAnnot().begin(); annot_it != bioseq.SetAnnot()… in RemoveEmptyFtable() local
1924 TAnnotIt annot_it; member
1935 for (auto annot_it = annots.begin(); in s_GatherRegionIterators() local
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| H A D | multireader.cpp | 1173 CRef<CSeq_annot> annot_it; in LoadAnnot() local
1206 bool CMultiReader::xFixupAnnot(CScope& scope, CRef<CSeq_annot>& annot_it) in xFixupAnnot()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | validerror_bioseqset.cpp | 608 CSeq_annot_CI annot_it (m_Scope->GetBioseq_setHandle(seqset)); in ValidateSetElements() local
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| H A D | valid_biosource.cpp | 2360 for (auto annot_it : se.GetAnnot()) { in GatherTentativeName() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/unit_test_util/ |
| H A D | unit_test_util.cpp | 1420 objects::CBioseq::TAnnot::iterator annot_it = entry->SetSeq().SetAnnot().begin(); in ChangeId() local
1456 objects::CBioseq::TAnnot::iterator annot_it = entry->SetSeq().SetAnnot().begin(); in ChangeId() local
1469 objects::CBioseq_set::TAnnot::iterator annot_it = entry->SetSet().SetAnnot().begin(); in ChangeId() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/discrepancy/ |
| H A D | sequence_tests.cpp | 604 for (auto& annot_it : bioseq.GetAnnot()) { variable
1513 for (auto& annot_it : bioseq.GetAnnot()) { variable
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | gather_items.cpp | 657 for (CAnnot_CI annot_it(seq, sel); in x_GatherReferences() local
782 for (CAnnot_CI annot_it(seq, sel); in x_GatherReferencesIdx() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
| H A D | gather_items.cpp | 657 for (CAnnot_CI annot_it(seq, sel); in x_GatherReferences() local
782 for (CAnnot_CI annot_it(seq, sel); in x_GatherReferencesIdx() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
| H A D | data_source.cpp | 990 TSeq_id2TSE_Set::const_iterator annot_it = in GetTSESetWithBioseqAnnots() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
| H A D | data_source.cpp | 990 TSeq_id2TSE_Set::const_iterator annot_it = in GetTSESetWithBioseqAnnots() local
|