| /dports/biology/bbmap/bbmap/current/jgi/ |
| H A D | Shred.java | 170 final ConcurrentReadInputStream cris; in process() local
211 void processInner(final ConcurrentReadInputStream cris, final ConcurrentReadOutputStream ros){ in processInner()
|
| H A D | GradeMergedReads.java | 119 …ConcurrentReadInputStream cris=ConcurrentReadInputStream.getReadInputStream(maxReads, true, ffraw1… in process() local
146 final ConcurrentReadInputStream cris; in process() local
|
| H A D | KeepBestCopy.java | 138 final ConcurrentReadInputStream cris; in makeCris() local
147 final ConcurrentReadInputStream cris=makeCris(); in process() local
|
| H A D | PartitionReads.java | 240 final ConcurrentReadInputStream cris; in process() local
286 void processInner(final ConcurrentReadInputStream cris, final ConcurrentReadOutputStream ros[]){ in processInner()
|
| H A D | DemuxByName2.java | 458 final ConcurrentReadInputStream cris=makeInputStream(); in process() local
490 …final ConcurrentReadInputStream cris=ConcurrentReadInputStream.getReadInputStream(maxReads, useSha… in makeInputStream() local
558 …private void processInner(final ConcurrentReadInputStream cris, final BufferedMultiCros mcros, fin… in processInner()
620 …private void cleanup(final ConcurrentReadInputStream cris, final BufferedMultiCros mcros, final Co… in cleanup()
|
| H A D | ReplaceHeaders.java | 217 final ConcurrentReadInputStream cris; in process() local
277 …void processInner(final ConcurrentReadInputStream cris, final ConcurrentReadInputStream hcris, fin… in processInner()
|
| H A D | DedupeByMapping.java | 153 …protected void processInner(final ConcurrentReadInputStream cris, final ConcurrentReadOutputStream… in processInner()
159 …void processInner_unsorted(final ConcurrentReadInputStream cris, final ConcurrentReadOutputStream … in processInner_unsorted()
286 …void processInner_sorted(final ConcurrentReadInputStream cris, final ConcurrentReadOutputStream ro… in processInner_sorted()
|
| H A D | FakeReads.java | 183 final ConcurrentReadInputStream cris; in process() local
|
| H A D | FindPrimers.java | 191 final ConcurrentReadInputStream cris; in process() local
255 …private void spawnThreads(final ConcurrentReadInputStream cris, final ConcurrentReadOutputStream r… in spawnThreads()
583 private final ConcurrentReadInputStream cris; field in FindPrimers.ProcessThread
|
| /dports/biology/bbmap/bbmap/current/pacbio/ |
| H A D | RemoveAdapters3.java | 122 final ConcurrentReadInputStream cris; in main() local
145 …public static void process(ConcurrentReadInputStream cris, ConcurrentReadOutputStream ros, String … in process()
|
| H A D | RemoveAdapters2.java | 138 final ConcurrentReadInputStream cris; in main() local
161 …public static void process(ConcurrentReadInputStream cris, ConcurrentReadOutputStream ros, String … in process()
|
| /dports/biology/bbmap/bbmap/current/tax/ |
| H A D | SplitByTaxa.java | 209 final ConcurrentReadInputStream cris; in process() local
251 …void processInner(final ConcurrentReadInputStream cris, HashMap<String, ConcurrentReadOutputStream… in processInner()
|
| H A D | FilterByTaxa.java | 212 final ConcurrentReadInputStream cris; in process() local
269 void processInner(final ConcurrentReadInputStream cris, final ConcurrentReadOutputStream ros){ in processInner()
|
| /dports/biology/bbmap/bbmap/current/driver/ |
| H A D | ReduceSilva.java | 142 final ConcurrentReadInputStream cris; in process() local
205 void processInner(final ConcurrentReadInputStream cris, final ConcurrentReadOutputStream ros){ in processInner()
|
| H A D | LoadReads.java | 175 final ConcurrentReadInputStream cris; in process() local
299 void processInner(final ConcurrentReadInputStream cris){ in processInner()
|
| /dports/biology/bbmap/bbmap/current/clump/ |
| H A D | ClumpTools.java | 25 ConcurrentCollectionReadInputStream cris=new ConcurrentCollectionReadInputStream(reads, null, -1); in getTable() local
|
| /dports/math/py-or-tools/or-tools-9.2/tools/ |
| H A D | setup_data.py | 5 setuptools_import_error_message = """setuptools is not installed for """ + sys.executable + """
|
| /dports/emulators/qemu/qemu-6.2.0/target/ |
| H A D | meson.build | 4 subdir('cris') subdir
|
| /dports/biology/bbmap/bbmap/current/cardinality/ |
| H A D | LogLogWrapper.java | 188 ConcurrentReadInputStream cris=null; in process() local
341 private final ConcurrentReadInputStream cris; field in LogLogWrapper.LogLogThread
|
| H A D | LogLog_old.java | 421 …ConcurrentReadInputStream cris=ConcurrentGenericReadInputStream.getReadInputStream(maxReads, false… in process() local
503 private final ConcurrentReadInputStream cris; field in LogLog_old.LogLogWrapper.LogLogThread
|
| /dports/biology/bbmap/bbmap/current/sketch/ |
| H A D | SketchMaker.java | 374 final ConcurrentReadInputStream cris; in sizeList() local
450 final ConcurrentReadInputStream cris; in sizeMap() local
597 private void spawnThreads(final ConcurrentReadInputStream cris){ in spawnThreads()
1319 private final ConcurrentReadInputStream cris; field in SketchMaker.ProcessThread
|
| /dports/emulators/qemu5/qemu-5.2.0/target/ |
| H A D | meson.build | 4 subdir('cris') subdir
|
| /dports/emulators/qemu60/qemu-6.0.0/target/ |
| H A D | meson.build | 4 subdir('cris') subdir
|
| /dports/biology/bbmap/bbmap/current/bloom/ |
| H A D | KmerCount5.java | 124 final ConcurrentReadInputStream cris; in count() local
193 final ConcurrentReadInputStream cris; in count() local
289 final ConcurrentReadInputStream cris; in countFastqSplit() local
|
| /dports/biology/bbmap/bbmap/current/stream/ |
| H A D | CrisWrapper.java | 92 public ConcurrentReadInputStream cris; field in CrisWrapper
|