Searched defs:ignoreStrand (Results 1 – 5 of 5) sorted by relevance
45 bool ignoreStrand = false; in pairtopair_main() local
20 … string searchType, bool ignoreStrand, bool reqDiffNames, int slop, bool strandedSlop) { in PairToPair()
73 bool ignoreStrand = false; in execute() local
303 public final boolean overlaps(SiteScore ss, boolean ignoreStrand){ in overlaps()
3190 public int insertSizeMapped(boolean ignoreStrand){ in insertSizeMapped()3194 public static int insertSizeMapped(Read r1, Read r2, boolean ignoreStrand){ in insertSizeMapped()