| /dports/biology/bbmap/bbmap/current/icecream/ |
| H A D | IceCreamAlignerJNI.java | 29 final int qlen=query.length; in alignForward() local
84 final int qlen=query.length; in alignForwardShort() local
124 final int qlen, final int rlen, final int minScore, final float minRatio) { in alignForwardPseudo()
220 …private static void alignForwardShortPseudo(int[] query, int[] ref, int[] retArray, int qlen, int … in alignForwardShortPseudo()
301 …private static native void alignForwardJNI(int[] query, int[] ref, int[] retArray, int qlen, int r… in alignForwardJNI()
302 …ive void alignForward16JNI(short[] query, short[] ref, int[] retArray, short qlen, short rlen, sho… in alignForward16JNI()
303 …private static native void alignForwardShortJNI(int[] query, int[] ref, int[] retArray, int qlen, … in alignForwardShortJNI()
304 …ve void alignForwardShort16JNI(short[] query, short[] ref, int[] retArray, short qlen, short rlen); in alignForwardShort16JNI()
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| /dports/biology/minimap2/minimap2-2.24/ |
| H A D | esterr.c | 7 static inline int32_t get_for_qpos(int32_t qlen, const mm128_t *a) in get_for_qpos()
16 static int get_mini_idx(int qlen, const mm128_t *a, int32_t n, const uint64_t *mini_pos) in get_mini_idx()
30 void mm_est_err(const mm_idx_t *mi, int qlen, int n_regs, mm_reg1_t *regs, const mm128_t *a, int32_… in mm_est_err()
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| H A D | ksw2_dispatch.c | 55 void ksw_extz2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_… in ksw_extz2_sse()
67 void ksw_extd2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_… in ksw_extd2_sse()
82 void ksw_exts2_sse(void *km, int qlen, const uint8_t *query, int tlen, const uint8_t *target, int8_… in ksw_exts2_sse()
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| /dports/biology/bowtie/bowtie-1.3.1/ |
| H A D | row_chaser.h | 44 static TIndexOffU toFlatRefOff(const Ebwt* ebwt, TIndexOffU qlen, TIndexOffU row) { in toFlatRefOff()
56 static UPair toRefOff(const Ebwt* ebwt, TIndexOffU qlen, TIndexOffU row) { in toRefOff()
69 void setRow(TIndexOffU row, TIndexOffU qlen, const Ebwt* ebwt) { in setRow()
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| /dports/devel/hyperscan/hyperscan-5.4.0/src/rose/ |
| H A D | infix.h | 50 u32 qlen = q->end - q->cur; /* includes MQE_START */ in canReduceQueue() local
90 u32 qlen = q->end - q->cur; /* includes MQE_START */ in reduceInfixQueue() local
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| /dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/ |
| H A D | list.c | 27 static int name_cmp(char const *name, unsigned const qlen, char const *qry) in name_cmp()
41 static bool find(List *list, unsigned *at, unsigned const qlen, char const *qry) in find()
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| /dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/axf/ |
| H A D | list.c | 27 static int name_cmp(char const *name, unsigned const qlen, char const *qry) in name_cmp()
41 static bool find(List *list, unsigned *at, unsigned const qlen, char const *qry) in find()
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| /dports/net/libunp/unpv12e/debug/ |
| H A D | qlen.c | 50 int qlen, j, k, junk, fd[MAXBACKLOG + 1]; in do_parent() local
92 int listenfd, qlen, junk; in do_child() local
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| /dports/textproc/html-xml-utils/html-xml-utils-8.0/ |
| H A D | connectsock.c | 76 EXPORT int passivesock(char *service, char *protocol, int qlen) in passivesock()
112 EXPORT int passiveTCP(char *service, int qlen) in passiveTCP()
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| /dports/textproc/erlang-p1_utils/p1_utils-1.0.23/include/ |
| H A D | p1_queue.hrl | 11 -define(qlen(Q), element(2, Q)). macro
|
| /dports/net/httping/httping-2.5/ |
| H A D | test_TFO.c | 13 int qlen = 5; in main() local
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| /dports/biology/bbmap/bbmap/jni/ |
| H A D | IceCreamAlignerJNI.c | 11 const jint qlen, const jint rlen, const jint minScore, const float minRatio) { in alignForwardJNI()
96 const jshort qlen, const jshort rlen, const jshort minScore, const float minRatio) { in alignForward16JNI()
194 void alignForwardShortJNI(jint * query, jint * ref, jint * retArray, const jint qlen, const jint rl… in alignForwardShortJNI()
282 void alignForwardShort16JNI(jshort * query, jshort * ref, jint * retArray, const jshort qlen, const… in alignForwardShort16JNI()
458 (JNIEnv *env, jobject obj, jintArray query, jintArray ref, jintArray rvector, jint qlen, jint rlen,… in Java_icecream_IceCreamAlignerJNI_alignForwardJNI()
474 (JNIEnv *env, jobject obj, jshortArray query, jshortArray ref, jintArray rvector, jshort qlen, jsho… in Java_icecream_IceCreamAlignerJNI_alignForward16JNI()
490 (JNIEnv *env, jobject obj, jintArray query, jintArray ref, jintArray rvector, jint qlen, jint rlen){ in Java_icecream_IceCreamAlignerJNI_alignForwardShortJNI()
506 (JNIEnv *env, jobject obj, jshortArray query, jshortArray ref, jintArray rvector, jshort qlen, jsho… in Java_icecream_IceCreamAlignerJNI_alignForwardShort16JNI()
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| /dports/biology/diamond/diamond-2.0.13/src/dp/ |
| H A D | scan_diags.cpp | 35 const int qlen = (int)qp.length(); in scan_diags128() local
133 const int qlen = (int)qp.length(); in scan_diags64() local
207 const int qlen = (int)qp.length(), band = d_end - d_begin; in scan_diags() local
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| /dports/net/wireshark-lite/wireshark-3.6.1/epan/dissectors/asn1/ieee1609dot2/ |
| H A D | IEEE1609dot2BaseTypes.asn | 89 CircularRegion ::= SEQUENCE {
239 BasePublicEncryptionKey ::= CHOICE {
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| /dports/dns/py-pycares/pycares-3.1.1/deps/c-ares/src/ |
| H A D | ares_send.c | 35 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send()
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| /dports/mail/vpopmail/vpopmail-5.4.33/vusaged/ |
| H A D | packet.c | 47 uint16_t qlen = 0; in packet_read() local
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| /dports/dns/c-ares/c-ares-1.17.2/src/lib/ |
| H A D | ares_send.c | 29 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send()
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| /dports/dns/ares/ares-1.1.1/ |
| H A D | ares_send.c | 28 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send()
|
| /dports/sysutils/fluent-bit/fluent-bit-1.8.11/lib/c-ares-809d5e84/src/lib/ |
| H A D | ares_send.c | 29 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send()
|
| /dports/www/node10/node-v10.24.1/deps/cares/src/ |
| H A D | ares_send.c | 35 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send()
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| /dports/devel/py-grpcio/grpcio-1.43.0/third_party/cares/cares/ |
| H A D | ares_send.c | 35 void ares_send(ares_channel channel, const unsigned char *qbuf, int qlen, in ares_send()
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| /dports/biology/bwa/bwa-0.7.17/ |
| H A D | ksw.c | 49 int qlen, slen; member
65 kswq_t *ksw_qinit(int size, int qlen, const uint8_t *query, int m, const int8_t *mat) in ksw_qinit()
214 int max = -1, tmp, low, high, qlen = slen * 16; in ksw_u8() local
319 int max = -1, tmp, low, high, qlen = slen * 8; in ksw_i16() local
345 kswr_t ksw_align2(int qlen, uint8_t *query, int tlen, uint8_t *target, int m, const int8_t *mat, in… in ksw_align2()
369 kswr_t ksw_align(int qlen, uint8_t *query, int tlen, uint8_t *target, int m, const int8_t *mat, int… in ksw_align()
382 int ksw_extend2(int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_… in ksw_extend2()
483 int ksw_extend(int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t… in ksw_extend()
506 int ksw_global2(int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_… in ksw_global2()
610 int ksw_global(int qlen, const uint8_t *query, int tlen, const uint8_t *target, int m, const int8_t… in ksw_global()
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| /dports/devel/cargo-c/cargo-c-0.9.6+cargo-0.58/cargo-crates/curl-sys-0.4.51+curl-7.80.0/curl/lib/ |
| H A D | dotdot.c | 171 size_t qlen; in Curl_dedotdotify() local
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| /dports/devel/sentry-cli/sentry-cli-1.71.0/cargo-crates/curl-sys-0.4.48+curl-7.79.1/curl/lib/ |
| H A D | dotdot.c | 171 size_t qlen; in Curl_dedotdotify() local
|
| /dports/audio/lewton/lewton-0.10.2/cargo-crates/curl-sys-0.4.25/curl/lib/ |
| H A D | dotdot.c | 171 size_t qlen; in Curl_dedotdotify() local
|