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Searched defs:samtools (Results 1 – 9 of 9) sorted by path

/dports/biology/freebayes/freebayes-1.3.5/paper/
H A Dreferences.bib83 @Article{samtools, article
/dports/biology/py-pysam/pysam-0.18.0/
H A DREADME.rst41 .. _samtools: http://samtools.sourceforge.net/ target in Pysam
/dports/biology/samtools/samtools-1.14/
H A DMakefile143 samtools: $(AOBJS) $(LZ4OBJS) libst.a $(HTSLIB) target
/dports/biology/seqan1/seqan-1.3.1/lib/samtools/
H A DMakefile42 samtools:lib-recur $(AOBJS) target
/dports/biology/ugene/ugene-40.1/src/plugins/GUITestBase/src/tests/regression_scenarios/
H A DGTTestsRegressionScenarios_1_1000.cpp2577 WorkflowProcessItem *samtools = GTUtilsWorkflowDesigner::getWorker(os, "SAMtools", true); in GUI_TEST_CLASS_DEFINITION() local
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/tophat/
H A DTopHatWorker.cpp655 QString samtools = getValue<QString>(TopHatWorkerFactory::SAMTOOLS_TOOL_PATH); in initSettings() local
/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/
H A DFilterBamWorker.cpp379 …ProcessRun samtools = ExternalToolSupportUtils::prepareProcess(SAMTOOLS_ID, settings.getSamtoolsAr… in run() local
H A DRmdupBamWorker.cpp299 …ProcessRun samtools = ExternalToolSupportUtils::prepareProcess(SAMTOOLS_ID, settings.getSamtoolsAr… in run() local
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/variants/src/
H A DAssemblySamtoolsMpileup.cpp193 …ProcessRun samtools = ExternalToolSupportUtils::prepareProcess(SAMTOOLS_ID, settings.getMpiliupArg… in run() local