| /dports/devel/binaryen/binaryen-version_98/test/ |
| H A D | fasta.cpp | 39 struct IUB { struct
48 Cumulative( IUB *start ) { in Cumulative() argument
50 for ( IUB *iter = start; iter->c; ++iter ) { in Cumulative()
66 IUB *iter = table[(unsigned int )( pct * slots )]; in operator []()
73 IUB *table[slots + 1];
139 Randomized( IUB *start ) : table(start) {} in Randomized()
149 IUB iub[] = {
169 IUB homosapiens[] = {
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| /dports/devel/emscripten/emscripten-2.0.3/tests/ |
| H A D | fasta.cpp | 44 struct IUB { struct
53 Cumulative( IUB *start ) { in Cumulative() argument
55 for ( IUB *iter = start; iter->c; ++iter ) { in Cumulative()
71 IUB *iter = table[(unsigned int )( pct * slots )]; in operator []()
78 IUB *table[slots + 1];
144 Randomized( IUB *start ) : table(start) {} in Randomized()
154 IUB iub[] = {
174 IUB homosapiens[] = {
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| /dports/lang/io-devel/io-9bfac31d/samples/shootout/ |
| H A D | fasta.io | 19 IUB := list(0.27, 0.12, 0.12, 0.27)
20 11 repeat( IUB append(0.02) )
64 Fasta random(3*n, IUB)
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Tools/ |
| H A D | IUPAC.pm | 170 use vars qw(%IUB %IUB_AMB %REV_IUB %IUP %IUP_AMB $AUTOLOAD);
174 %IUB = (
374 return %IUB; # nucleic
451 return %IUB;
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| /dports/devel/emscripten/emscripten-2.0.3/tests/core/ |
| H A D | test_constglobalstructs.c | 9 struct IUB { struct
15 struct IUB iub[] = {{'a', 0.27, 5}, {'c', 0.15, 4}, {'g', 0.12, 3}, {'t', 0.27, 2}, }; argument
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| H A D | test_conststructs.c | 9 struct IUB { struct
17 struct IUB iub[] = {{'a', 0.3029549426680, 5}, in main() argument
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| H A D | test_i64_2.cpp | 35 struct IUB { struct
40 IUB iub[] = { argument
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| /dports/audio/guitarix-lv2/guitarix-0.43.1/tools/ampsim/tensbs/ |
| H A D | bint4.f | 102 INTEGER I, IBCL, IBCR, IFLAG, ILB, ILEFT, IT, IUB, IW, IWP, J,
206 IUB = 2 - IW
209 CALL BNFAC(W(IWP,1), NWROW, N, ILB, IUB, IFLAG)
211 CALL BNSLV(W(IWP,1), NWROW, N, ILB, IUB, BCOEF)
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| /dports/math/cmlib/cmlib-3.0_8/src/dbsplin/ |
| H A D | dbint4.f | 108 INTEGER I, IBCL, IBCR, IFLAG, ILB, ILEFT, IT, IUB, IW, IWP, J,
212 IUB = 2 - IW
215 CALL DBNFAC(W(IWP,1), NWROW, N, ILB, IUB, IFLAG)
217 CALL DBNSLV(W(IWP,1), NWROW, N, ILB, IUB, BCOEF)
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| /dports/math/cmlib/cmlib-3.0_8/src/bspline/ |
| H A D | bint4.f | 105 INTEGER I, IBCL, IBCR, IFLAG, ILB, ILEFT, IT, IUB, IW, IWP, J,
209 IUB = 2 - IW
212 CALL BNFAC(W(IWP,1), NWROW, N, ILB, IUB, IFLAG)
214 CALL BNSLV(W(IWP,1), NWROW, N, ILB, IUB, BCOEF)
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| /dports/math/slatec/src/ |
| H A D | bint4.f | 101 INTEGER I, IBCL, IBCR, IFLAG, ILB, ILEFT, IT, IUB, IW, IWP, J,
205 IUB = 2 - IW
208 CALL BNFAC(W(IWP,1), NWROW, N, ILB, IUB, IFLAG)
210 CALL BNSLV(W(IWP,1), NWROW, N, ILB, IUB, BCOEF)
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| H A D | dbint4.f | 103 INTEGER I, IBCL, IBCR, IFLAG, ILB, ILEFT, IT, IUB, IW, IWP, J,
207 IUB = 2 - IW
210 CALL DBNFAC(W(IWP,1), NWROW, N, ILB, IUB, IFLAG)
212 CALL DBNSLV(W(IWP,1), NWROW, N, ILB, IUB, BCOEF)
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| /dports/lang/fpc-source/fpc-3.2.2/tests/bench/shootout/src/ |
| H A D | fasta.pp | 24 const IUB : array[0..14] of double = ( 0.27, 0.12, 0.12, 0.27,
145 writeln('>TWO IUB ambiguity codes');
146 fastaRandom(n*3, IUB);
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| /dports/science/openbabel/openbabel-3.1.1/test/pdb_ligands_sdf/ |
| H A D | 3iub_fg2.sdf | 3 Coordinates from PDB:3IUB:A:302 Model:1 without hydrogens
111 3IUB
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| H A D | 5iub_6dv.sdf | 3 Coordinates from PDB:5IUB:A:2401 Model:1 without hydrogens
145 5IUB
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| /dports/math/algae/algae-4.3.6/src/ |
| H A D | thin.f | 953 INTEGER I, J, L, JJ, IH, IUA, IUB, AI1, AI2, LAST, LN
963 IUB = IU(IH) - 1
964 IF ( IUB .LT. IUA ) GO TO 40
965 DO 20 J = IUA, IUB
1009 IF ( IUB .LT. IUA ) GO TO 120
1010 DO 100 J = IUA, IUB
1051 INTEGER LH, IUA, IUB
1083 IUB = IU(LH) - 1
1084 IF ( LH .EQ. I ) IUB = JPI - 1
1086 DO 50 J = IUA, IUB
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| /dports/biology/ugene/ugene-40.1/data/cmdline/ |
| H A D | align-clustalw.uwl | 65 …IUB - The default scoring matrix used by BESTFIT for the comparison of nucleic acid sequences. All…
|
| /dports/lang/kawa/kawa-3.1.1/testsuite/ |
| H A D | fasta.scm | 18 (define IUB :: vector unknown
106 (random-fasta "TWO" "IUB ambiguity codes" (* n 3) IUB out)
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/data/ |
| H A D | Ebases.iub | 1 # IUB codes for nucleotides
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| H A D | Eresidues.iub | 1 # IUB codes for proteins
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| /dports/science/mdynamix/md528/makemol/ |
| H A D | makemol.f | 98 IUB=1
107 if(STR(1:5).eq.'No_UB')IUB=0
520 if(SA(J).gt.0.and.IUB.gt.0)then
533 if(IUB.gt.0)write(20,*)NUB,' Urey-Bradley terms added'
567 if(IUB.gt.0)then
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| /dports/lang/gcc6-aux/gcc-6-20180516/gcc/testsuite/go.test/test/bench/shootout/ |
| H A D | fasta-1000.out | 36 >TWO IUB ambiguity codes
|
| /dports/lang/gcc8/gcc-8.5.0/gcc/testsuite/go.test/test/bench/shootout/ |
| H A D | fasta-1000.out | 36 >TWO IUB ambiguity codes
|
| /dports/lang/gcc10/gcc-10.3.0/gcc/testsuite/go.test/test/bench/shootout/ |
| H A D | fasta-1000.out | 36 >TWO IUB ambiguity codes
|
| /dports/devel/riscv64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/go.test/test/bench/shootout/ |
| H A D | fasta-1000.out | 36 >TWO IUB ambiguity codes
|