/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/sequtil/ |
H A D | sequtil_convert.cpp | 52 TCoding dst_coding) in Convert() argument 56 dst, dst_coding); in Convert() 67 TCoding dst_coding) in Convert() argument 71 dst, dst_coding); in Convert() 82 TCoding dst_coding) in Convert() argument 86 dst, dst_coding); in Convert() 97 TCoding dst_coding) in Convert() argument 111 TCoding dst_coding) in Convert() argument 182 TCoding& dst_coding, in Pack() argument 193 TCoding& dst_coding, in Pack() argument [all …]
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H A D | sequtil_convert_imp.hpp | 57 TCoding dst_coding) in Convert() argument 66 ResizeDst(dst, dst_coding, length); in Convert() 69 &*dst.begin(), dst_coding); in Convert() 75 char* dst, TCoding dst_coding); 110 TCoding& dst_coding, in Pack() argument 123 &*dst.begin(), dst_coding); in Pack() 124 if ( dst_coding == CSeqUtil::e_Ncbi2na ) { in Pack() 135 char* dst, TCoding& dst_coding);
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H A D | sequtil_convert_imp.cpp | 66 TCoding dst_coding) in Convert() argument 77 if ( src_coding == dst_coding ) { in Convert() 88 switch ( dst_coding ) { in Convert() 105 switch ( dst_coding ) { in Convert() 122 switch ( dst_coding ) { in Convert() 139 switch ( dst_coding ) { in Convert() 157 switch ( dst_coding ) { in Convert() 180 switch ( dst_coding ) { in Convert() 193 switch ( dst_coding ) { in Convert() 207 switch ( dst_coding ) { in Convert() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/util/sequtil/ |
H A D | sequtil_convert.cpp | 52 TCoding dst_coding) in Convert() argument 56 dst, dst_coding); in Convert() 67 TCoding dst_coding) in Convert() argument 71 dst, dst_coding); in Convert() 82 TCoding dst_coding) in Convert() argument 86 dst, dst_coding); in Convert() 97 TCoding dst_coding) in Convert() argument 111 TCoding dst_coding) in Convert() argument 182 TCoding& dst_coding, in Pack() argument 193 TCoding& dst_coding, in Pack() argument [all …]
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H A D | sequtil_convert_imp.hpp | 57 TCoding dst_coding) in Convert() argument 66 ResizeDst(dst, dst_coding, length); in Convert() 69 &*dst.begin(), dst_coding); in Convert() 75 char* dst, TCoding dst_coding); 110 TCoding& dst_coding, in Pack() argument 123 &*dst.begin(), dst_coding); in Pack() 124 if ( dst_coding == CSeqUtil::e_Ncbi2na ) { in Pack() 135 char* dst, TCoding& dst_coding);
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H A D | sequtil_convert_imp.cpp | 66 TCoding dst_coding) in Convert() argument 77 if ( src_coding == dst_coding ) { in Convert() 88 switch ( dst_coding ) { in Convert() 105 switch ( dst_coding ) { in Convert() 122 switch ( dst_coding ) { in Convert() 139 switch ( dst_coding ) { in Convert() 157 switch ( dst_coding ) { in Convert() 180 switch ( dst_coding ) { in Convert() 193 switch ( dst_coding ) { in Convert() 207 switch ( dst_coding ) { in Convert() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/sequtil/ |
H A D | sequtil_convert.hpp | 74 string& dst, TCoding dst_coding); 79 vector< char >& dst, TCoding dst_coding); 84 string& dst, TCoding dst_coding); 89 vector< char >& dst, TCoding dst_coding); 94 char dst[], TCoding dst_coding); 125 vector<char>& dst, TCoding& dst_coding, 128 vector<char>& dst, TCoding& dst_coding, 131 char* dst, TCoding& dst_coding);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/sequtil/ |
H A D | sequtil_convert.hpp | 74 string& dst, TCoding dst_coding); 79 vector< char >& dst, TCoding dst_coding); 84 string& dst, TCoding dst_coding); 89 vector< char >& dst, TCoding dst_coding); 94 char dst[], TCoding dst_coding); 125 vector<char>& dst, TCoding& dst_coding, 128 vector<char>& dst, TCoding& dst_coding, 131 char* dst, TCoding& dst_coding);
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
H A D | seq_vector.cpp | 328 TCoding dst_coding = GetCoding(); in GetPackedSeqData() local 329 switch ( dst_coding ) { in GetPackedSeqData() 834 TCoding dst_coding = GetCoding(); in x_GetPacked8SeqData() local 848 if ( dst_coding != src_coding || reverse || in x_GetPacked8SeqData() 852 if ( !table && src_coding != dst_coding ) { in x_GetPacked8SeqData() 926 TCoding dst_coding = GetCoding(); in x_GetPacked4naSeqData() local 941 if ( dst_coding != src_coding || reverse || in x_GetPacked4naSeqData() 945 if ( !table && src_coding != dst_coding ) { in x_GetPacked4naSeqData() 1017 TCoding dst_coding = CSeq_data::e_Ncbi2na; in x_GetPacked2naSeqData() local 1022 dst_coding = CSeq_data::e_Ncbi4na; in x_GetPacked2naSeqData() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
H A D | seq_vector.cpp | 328 TCoding dst_coding = GetCoding(); in GetPackedSeqData() local 329 switch ( dst_coding ) { in GetPackedSeqData() 834 TCoding dst_coding = GetCoding(); in x_GetPacked8SeqData() local 848 if ( dst_coding != src_coding || reverse || in x_GetPacked8SeqData() 852 if ( !table && src_coding != dst_coding ) { in x_GetPacked8SeqData() 926 TCoding dst_coding = GetCoding(); in x_GetPacked4naSeqData() local 941 if ( dst_coding != src_coding || reverse || in x_GetPacked4naSeqData() 945 if ( !table && src_coding != dst_coding ) { in x_GetPacked4naSeqData() 1017 TCoding dst_coding = CSeq_data::e_Ncbi2na; in x_GetPacked2naSeqData() local 1022 dst_coding = CSeq_data::e_Ncbi4na; in x_GetPacked2naSeqData() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/edit/ |
H A D | gaps_edit.cpp | 62 CSeqUtil::TCoding dst_coding = CSeqUtil::e_Iupacna; in Make_Iupacna() local 69 CSeqConvert::Convert(src, src_coding, 0, len, decoded, dst_coding); \ in Make_Iupacna()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/edit/ |
H A D | gaps_edit.cpp | 62 CSeqUtil::TCoding dst_coding = CSeqUtil::e_Iupacna; in Make_Iupacna() local 69 CSeqConvert::Convert(src, src_coding, 0, len, decoded, dst_coding); \ in Make_Iupacna()
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