Home
last modified time | relevance | path

Searched refs:get_distance (Results 1 – 25 of 459) sorted by relevance

12345678910>>...19

/dports/science/py-pymol/pymol-open-source-2.4.0/test/inp/
H A DC0800matrices.pml28 cmd.get_distance("mol1///5/ca","mol3///5/ca"), \
29 cmd.get_distance("mol2///5/ca","mol3///5/ca")))
40 cmd.get_distance("mol1///5/ca","mol3///5/ca"), \
41 cmd.get_distance("mol2///5/ca","mol3///5/ca")))
54 cmd.get_distance("mol1///5/ca","mol3///5/ca"), \
55 cmd.get_distance("mol2///5/ca","mol3///5/ca")))
68 cmd.get_distance("mol1///5/ca","mol3///5/ca"), \
69 cmd.get_distance("mol2///5/ca","mol3///5/ca")))
85 cmd.get_distance("mol1///5/ca","mol3///5/ca"), \
86 cmd.get_distance("mol2///5/ca","mol3///5/ca")))
[all …]
/dports/science/py-ase/ase-3.22.0/ase/test/atoms/
H A Dtest_mic.py31 assert abs(a.get_distance(0, 1, mic=False) - d01F) < tol
32 assert abs(a.get_distance(0, 2, mic=False) - d02F) < tol
33 assert abs(a.get_distance(0, 3, mic=False) - d03F) < tol
36 assert abs(a.get_distance(0, 1, mic=True) - d01T) < tol
37 assert abs(a.get_distance(0, 2, mic=True) - d02T) < tol
38 assert abs(a.get_distance(0, 3, mic=True) - d03T) < tol
41 assert all(abs(a.get_distance(0, 1, mic=False, vector=True)
43 assert all(abs(a.get_distance(0, 2, mic=False, vector=True)
47 assert np.all(abs(a.get_distance(0, 1, mic=True, vector=True)
111 assert abs(a.get_distance(0, 1, mic=False) - 11.) < tol
[all …]
H A Dtest_atoms_distance.py18 assert a.get_distance(0, 1, mic=True) == 2
19 assert a.get_distance(1, 2, mic=True) == 3
20 assert a.get_distance(0, 2, mic=True) == 4
23 assert a.get_distance(0, 1, mic=False) == 2
24 assert a.get_distance(1, 2, mic=False) == 3
25 assert a.get_distance(0, 2, mic=False) == 5
44 old = a.get_distance(0, 1)
46 new = a.get_distance(0, 1)
51 old = a.get_distance(0, 1)
53 new = a.get_distance(0, 1)
/dports/science/py-ase/ase-3.22.0/ase/test/constraints/
H A Dtest_CO2linear_Au111.py22 d0 = co2.get_distance(-3, -2)
23 d1 = co2.get_distance(-3, -1)
24 d2 = co2.get_distance(-2, -1)
36 assert abs(slab.get_distance(-3, -2, mic=1) - d0) < 1e-9
37 assert abs(slab.get_distance(-3, -1, mic=1) - d1) < 1e-9
38 assert abs(slab.get_distance(-2, -1, mic=1) - d2) < 1e-9
H A Dtest_fixbondlength_CO2_Au111.py24 d0 = co2.get_distance(-3, -2)
25 d1 = co2.get_distance(-3, -1)
36 assert abs(slab.get_distance(-3, -2, mic=1) - d0) < 1e-9
37 assert abs(slab.get_distance(-3, -1, mic=1) - d1) < 1e-9
H A Dtest_external_force.py29 dist1 = atoms.get_distance(atom1, atom2)
35 dist2 = atoms.get_distance(atom1, atom2)
63 d1 = atoms.get_distance(atom1, atom3)
68 d2 = atoms.get_distance(atom1, atom3)
H A Dtest_mirror.py9 dist = atoms.get_distance(0, 1)
16 assert round(dist - atoms.get_distance(0, 1), 5) == 0
21 dist = atoms.get_distance(1, 2)
H A Dtest_fix_bond_length_mic.py23 d1 = a.get_distance(0, 2, mic=True)
28 d2 = a.get_distance(0, 2, mic=True)
/dports/science/py-ase/ase-3.22.0/ase/test/md/
H A Dtest_CO2linear_Au111_langevin.py30 d0 = co2.get_distance(-3, -2)
31 d1 = co2.get_distance(-3, -1)
32 d2 = co2.get_distance(-2, -1)
53 assert abs(slab.get_distance(-3, -2, mic=1) - d0) < 1e-9
54 assert abs(slab.get_distance(-3, -1, mic=1) - d1) < 1e-9
55 assert abs(slab.get_distance(-2, -1, mic=1) - d2) < 1e-9
/dports/games/widelands/widelands-build21/src/ai/test/
H A Dtest_ai.cc39 BOOST_CHECK_EQUAL(fw.get_distance(0, 0, &tmp_wh), 1000); in BOOST_AUTO_TEST_CASE()
41 BOOST_CHECK_EQUAL(fw.get_distance(1, 2, &tmp_wh), 2); // distance now 2 in BOOST_AUTO_TEST_CASE()
47 BOOST_CHECK_EQUAL(fw.get_distance(1, kFlagDistanceExpirationPeriod / 3, &tmp_wh), 2); in BOOST_AUTO_TEST_CASE()
53 BOOST_CHECK_EQUAL(fw.get_distance(1, kFlagDistanceExpirationPeriod / 3, &tmp_wh), 1); in BOOST_AUTO_TEST_CASE()
65 BOOST_CHECK_EQUAL(fw.get_distance(1, kFlagDistanceExpirationPeriod * 2 / 3, &tmp_wh), 3); in BOOST_AUTO_TEST_CASE()
78 BOOST_CHECK_EQUAL(fw.get_distance(1, 3, &tmp_wh), 3); in BOOST_AUTO_TEST_CASE()
92 BOOST_CHECK_EQUAL(fw.get_distance(1, kFlagDistanceExpirationPeriod + 3, &tmp_wh), 1000); in BOOST_AUTO_TEST_CASE()
98 BOOST_CHECK_EQUAL(fw.get_distance(1, 2 * kFlagDistanceExpirationPeriod, &tmp_wh), 2); in BOOST_AUTO_TEST_CASE()
100 BOOST_CHECK_EQUAL(fw.get_distance(1, 2 * kFlagDistanceExpirationPeriod + 15, &tmp_wh), 1000); in BOOST_AUTO_TEST_CASE()
/dports/science/madness/madness-ebb3fd7/src/examples/
H A Dac_corr.cc46 double get_distance(Vector<double,NDIM> elec, Vector<double,NDIM> nuc) const{ in get_distance() function in xc_functor
58 double dist = get_distance(r, atoms[0].coord)*get_distance(r, atoms[0].coord); in density()
63 ….4328790*get_distance(r, atoms[0].coord)*get_distance(r, atoms[0].coord))+ 0.6789140*exp(-0.433051… in density()
/dports/biology/p5-Bio-NEXUS/Bio-NEXUS-0.78/t/
H A Dtree_methods-02.t92 is($root_node->get_distance($node_H),7, "Distance of root to node H is correct");
93 is($root_node->get_distance($node_A),9, "Distance of root to node A is correct");
105 is($root_node->get_distance($node_H),$node_H->get_distance($root_node), "Consistency check for the …
116 is($node_H->get_distance($root_node),7, "Distance of node H to root node is correct");
117 is($node_H->get_distance($node_A),16, "Distance of node H to node A is correct");
/dports/games/solarus/solarus-f43727b232b3ed13d98440a845e2a29e470e4f0d/include/solarus/core/
H A DGeometry.h69 double get_distance(int x1, int y1, int x2, int y2);
71 double get_distance(const Point& point1, const Point& point2);
87 inline double get_distance(int x1, int y1, int x2, int y2) { in get_distance() function
115 inline double get_distance(const Point& point1, const Point& point2) { in get_distance() function
117 return get_distance(point1.x, point1.y, point2.x, point2.y); in get_distance()
/dports/biology/py-ete3/ete3-3.1.2/examples/general/
H A Dget_distances_between_nodes.py33 print "The distance between A and C is", A.get_distance("C")
35 print "The distance between A and C is", t.get_distance("A","C")
38 t.get_distance("A","D", topology_only=True)
/dports/science/py-ase/ase-3.22.0/ase/test/neb/
H A Dtest_idpp.py16 d0 = images[3].get_distance(2, 3)
18 d1 = images[3].get_distance(2, 3)
20 d2 = images[3].get_distance(2, 3)
/dports/science/py-ase/ase-3.22.0/ase/test/
H A Dtest_things.py13 assert abs(hcp.get_distance(0, 3, mic=True) - 1) < 1e-12
14 assert abs(hcp.get_distance(0, 4, mic=True) - 1) < 1e-12
15 assert abs(hcp.get_distance(2, 5, mic=True) - 1) < 1e-12
/dports/science/py-ase/ase-3.22.0/ase/test/emt/
H A Dtest_emt1.py19 d0 = cu.get_distance(0, 1)
23 print(cu.get_distance(0, 1))
32 assert abs(cu.get_distance(0, 1) - d0) < 1e-14
H A Dtest_emt_h3o2m.py49 print(image.get_distance(1, 2), image.get_potential_energy())
64 print(image.get_distance(1, 2), image.get_potential_energy())
70 print(image.get_distance(1, 2), image.get_potential_energy())
/dports/biology/py-biopython/biopython-1.79/Tests/
H A Dtest_TreeConstruction.py147 dm = calculator.get_distance(aln)
151 dm = calculator.get_distance(aln)
155 dm = calculator.get_distance(aln)
159 dm = calculator.get_distance(aln)
165 dmat = DistanceCalculator("blosum62").get_distance(aln)
169 dmat = DistanceCalculator().get_distance(aln)
180 self.dm = calculator.get_distance(self.aln)
203 self.min_dm = calculator.get_distance(self.aln)
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/
H A Dtest_tree.py326 orig_dist = t.get_distance('A')
332 orig_dist = t.get_distance('A')
338 orig_dist = t.get_distance('A')
611 self.assertEqual(A.get_distance(A), 0)
612 self.assertEqual(I.get_distance(I), 0)
613 self.assertEqual(A.get_distance(root), root.get_distance(A))
615 self.assertEqual(t.get_distance(A, root), root.get_distance(A))
616 self.assertEqual(t.get_distance(root, A), A.get_distance(root))
644 d1 = YGR138C.get_distance(YGR028W)
649 d2 = YGR138C.get_distance(YGR028W)
[all …]
/dports/math/lidia/lidia-2.3.0+latte-patches-2014-10-04/src/number_fields/quadratic_order/
H A Dquadratic_order2.cc61 ceil(temp, A.get_distance()); in rBJT()
113 subtract(R, D.get_distance(), F->get_distance()); in rBJT()
170 if (A.get_distance() > u) { in rshanks()
171 ceil(temp, A.get_distance()); in rshanks()
214 hR.assign(D.get_distance()); in rshanks()
237 subtract(hR, D.get_distance(), F->get_distance()); in rshanks()
251 subtract(hR, BB.get_distance(), F->get_distance()); in rshanks()
319 subtract(Rval, B.get_distance(), F->get_distance()); in find_hstar()
385 subtract(temp, A.get_distance(), F->get_distance()); in find_hstar()
941 while ((F.get_distance() < Gstep.get_distance()) && (!F.is_one())) { in cgBJT_real()
[all …]
/dports/astro/celestia-gtk/celestia-1.6.1/scripts/
H A Dz-dist.celx3 function get_distance(obj_pos, ref_pos)
45 local d = get_distance(dso_pos,sel_pos)
59 local d = get_distance(dso_pos, ref_pos)
115 local d = get_distance(MW_pos,sel_pos)
/dports/astro/celestia/celestia-1.6.1/scripts/
H A Dz-dist.celx3 function get_distance(obj_pos, ref_pos)
45 local d = get_distance(dso_pos,sel_pos)
59 local d = get_distance(dso_pos, ref_pos)
115 local d = get_distance(MW_pos,sel_pos)
/dports/science/madness/madness-ebb3fd7/src/apps/chem/
H A DAC.h41 double get_distance(Vector<double,NDIM> elec, Vector<double,NDIM> nuc) const{ in get_distance() function
202 d = get_distance(r, x.coord); in operator()
240 int_factor += (- get_distance(r,x.coord) + x.R2)/(x.R2-x.R1); in int_factor()
253 double get_distance(Vector<double,NDIM> elec, Vector<double,NDIM> nuc) const{ in get_distance() function
290 d = get_distance(r, x.coord); in operator()
320 double get_distance(Vector<double,NDIM> elec, Vector<double,NDIM> nuc) const{ in get_distance() function
336 pot += double(x.charge)/get_distance(r, x.coord); in potential()
/dports/devel/taskflow/taskflow-3.2.0/3rd-party/tbb/examples/concurrent_priority_queue/shortpath/
H A Dshortpath.cpp48 double get_distance(const point& p1, const point& p2) { in get_distance() function
119 … f_distance[src] = get_distance(vertices[src], vertices[dst]); // estimate distance from src to dst in shortpath()
144 double new_g_v = old_g_u + get_distance(vertices[u], vertices[v]); in shortpath_helper()
153 … new_f_v = f_distance[v] = g_distance[v] + get_distance(vertices[v], vertices[dst]); in shortpath_helper()
188 double seg_length = get_distance(vertices[path[i]], vertices[path[i+1]]); in print_path()

12345678910>>...19