Searched refs:jbaseToNumber (Results 1 – 2 of 2) sorted by relevance
/dports/biology/bbmap/bbmap/jni/ |
H A D | BandedAlignerJNI.c | 608 jbyte * jbaseToNumber = (jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_BandedAlignerJNI_alignForwardJNI() local 622 lastQueryLoc, lastRefLoc, lastRow, lastEdits, lastOffset, maxWidth, jbaseToNumber); in Java_align2_BandedAlignerJNI_alignForwardJNI() 625 (*env)->ReleasePrimitiveArrayCritical(env, baseToNumber, jbaseToNumber, JNI_ABORT); in Java_align2_BandedAlignerJNI_alignForwardJNI() 653 jbyte * jbaseToNumber = (jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_BandedAlignerJNI_alignForwardRCJNI() local 665 …lastQueryLoc, lastRefLoc, lastRow, lastEdits, lastOffset, maxWidth, jbaseToNumber, jbaseToCompleme… in Java_align2_BandedAlignerJNI_alignForwardRCJNI() 668 (*env)->ReleasePrimitiveArrayCritical(env, baseToNumber, jbaseToNumber, JNI_ABORT); in Java_align2_BandedAlignerJNI_alignForwardRCJNI() 694 jbyte * jbaseToNumber = (jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_BandedAlignerJNI_alignReverseJNI() local 706 lastQueryLoc, lastRefLoc, lastRow, lastEdits, lastOffset, maxWidth, jbaseToNumber); in Java_align2_BandedAlignerJNI_alignReverseJNI() 708 (*env)->ReleasePrimitiveArrayCritical(env, baseToNumber, jbaseToNumber, JNI_ABORT); in Java_align2_BandedAlignerJNI_alignReverseJNI() 736 jbyte * jbaseToNumber = (jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_BandedAlignerJNI_alignReverseRCJNI() local [all …]
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H A D | MultiStateAligner11tsJNI.c | 789 jbyte * jbaseToNumber=(jbyte*)(*env)->GetPrimitiveArrayCritical(env, baseToNumber, NULL); in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI() local 796 …AY,maxRows,maxColumns,bandwidth,bandwidthRatio,jvertLimit,jhorizLimit,jbaseToNumber,jPOINTSoff_INS… in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI() 808 (*env)->ReleasePrimitiveArrayCritical(env, baseToNumber, jbaseToNumber, JNI_ABORT); in Java_align2_MultiStateAligner11tsJNI_fillLimitedXJNI()
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