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Searched refs:phaseinfo_alias (Results 1 – 5 of 5) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dpgenlib_ffi_support.cc124 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in GenoarrPhasedToHapCodes() local
134 uintptr_t phaseinfo_hw = phaseinfo_alias[widx]; in GenoarrPhasedToHapCodes()
409 Halfword* phaseinfo_alias = R_CAST(Halfword*, phaseinfo); in AlleleCodesToGenoarrUnsafe() local
455 phaseinfo_alias[widx] = phaseinfo_write_hw; in AlleleCodesToGenoarrUnsafe()
488 phaseinfo_alias[widx] = phaseinfo_write_hw; in AlleleCodesToGenoarrUnsafe()
H A Dplink2_import.cc1343 phaseinfo_alias[widx] = phaseinfo_hw; in VcfConvertPhasedBiallelicDosageLine()
1975 phaseinfo_alias[widx] = phaseinfo_hw; in VcfConvertPhasedBiallelicLine()
2403 phaseinfo_alias[widx] = phaseinfo_hw; in VcfConvertPhasedMultiallelicLine()
5965 phaseinfo_alias[vidx] = cur_phaseinfo; in BcfConvertPhasedBiallelic()
6018 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedBiallelic()
6076 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedBiallelic()
6242 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedMultiallelic()
6359 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedMultiallelic()
6476 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedMultiallelic()
6592 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedMultiallelic()
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H A Dplink2_export.cc2552 const unsigned char* phaseinfo_alias = R_CAST(const unsigned char*, pgv.phaseinfo); in ExportBgen13Thread() local
2564 uint32_t cur_phaseinfo4 = phaseinfo_alias[geno_byte_idx_d2]; in ExportBgen13Thread()
6955 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, pgvp->phaseinfo); in FillBcf3allelicPhasedGt() local
6980 const uint32_t phaseinfo_hw = phaseinfo_alias[widx]; in FillBcf3allelicPhasedGt()
7038 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, pgvp->phaseinfo); in FillBcf64allelicPhasedGt() local
7063 const uint32_t phaseinfo_hw = phaseinfo_alias[widx]; in FillBcf64allelicPhasedGt()
/dports/biology/plink/plink-ng-79b2df8c/2.0/pgenlibr/src/
H A Dpgenlib_ffi_support.cpp124 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in GenoarrPhasedToHapCodes() local
134 uintptr_t phaseinfo_hw = phaseinfo_alias[widx]; in GenoarrPhasedToHapCodes()
409 Halfword* phaseinfo_alias = R_CAST(Halfword*, phaseinfo); in AlleleCodesToGenoarrUnsafe() local
455 phaseinfo_alias[widx] = phaseinfo_write_hw; in AlleleCodesToGenoarrUnsafe()
488 phaseinfo_alias[widx] = phaseinfo_write_hw; in AlleleCodesToGenoarrUnsafe()
/dports/biology/plink/plink-ng-79b2df8c/2.0/include/
H A Dpgenlib_misc.cc1745 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in PhaseLookup4b() local
1778 phaseinfo_hw_shifted = phaseinfo_alias[widx]; in PhaseLookup4b()
1854 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in PhaseLookup8b() local
1884 phaseinfo_hw_shifted = phaseinfo_alias[widx]; in PhaseLookup8b()
1902 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in PhaseLookup8b() local
1932 phaseinfo_hw_shifted = phaseinfo_alias[widx]; in PhaseLookup8b()
2008 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in PhaseXNohhLookup4b() local
2246 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in VcfPhaseLookup4b() local
2272 phaseinfo_hw_shifted = phaseinfo_alias[widx]; in VcfPhaseLookup4b()
2382 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in VcfPhaseLookup2b() local
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