Searched refs:r1_step2_locations (Results 1 – 1 of 1) sorted by relevance
2649 int r1_step2_locations = 0, r2_step2_locations = 0; local2709 else r1_step2_locations = best_read_id + 1;2812 …ent_MISMATCH_buffer [read_record_i] + ( is_second_read?(r2_step2_locations): (r1_step2_locations));2988 r1_realign -> MAPQ_adjustment = r1_step2_locations + final_MISMATCH_buffer1[r1_best_id];