Searched refs:tmp_bq_al (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/vt/vt-0.57721/ |
| H A D | indel_genotyping_record.h | 80 int32_t tmp_al_s1, tmp_bq_al, tmp_mq_al; variable
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| H A D | vntr_genotyping_record.h | 86 int32_t tmp_al_s1, tmp_bq_al, tmp_mq_al; variable
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| H A D | snp_genotyping_record.h | 103 int32_t tmp_al_s1, tmp_bq_al, tmp_mq_al; variable
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| H A D | complex_genotyping_record.h | 103 int32_t tmp_al_s1, tmp_bq_al, tmp_mq_al; variable
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| H A D | genotyping_record.h | 128 int32_t tmp_al_s1, tmp_bq_al, tmp_mq_al; variable
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| H A D | vntr_genotyping_record.cpp | 79 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp()
352 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample()
431 tmp_bq_al += q; in add_allele()
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| H A D | snp_genotyping_record.cpp | 98 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp()
355 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample()
434 tmp_bq_al += q; in add_allele()
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| H A D | indel_genotyping_record.cpp | 103 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp()
368 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample()
447 tmp_bq_al += q; in add_allele()
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| H A D | complex_genotyping_record.cpp | 139 tmp_al_s1 = tmp_bq_al = tmp_mq_al = tmp_cy_al = tmp_st_al = tmp_nm_al = 0; in clearTemp()
404 …float bqr = sqrt_dp_ra * Estimator::compute_correlation( tmp_dp_ra, tmp_bq_al, tmp_bq_s1, tmp_bq_s… in flush_sample()
483 tmp_bq_al += q; in add_allele()
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