142 						for(int i=baseChrom(minChrom); i<=maxChrom; i++){  in makeArrays()
173 			Data.sysout.println("Indexing threads started for block "+baseChrom(minChrom)+"-"+maxChrom);  in makeArrays()
184 			Data.sysout.println("Indexing threads finished for block "+baseChrom(minChrom)+"-"+maxChrom);  in makeArrays()
192 				for(int i=baseChrom(minChrom); i<=maxChrom; i++){  in makeArrays()
354 				int baseChrom=baseChrom(chrom);  in fillArrays()  local
410 							assert(numberToChrom(number, baseChrom)==chrom);  in fillArrays()
441 		public final int numberToChrom(int number, int baseChrom){  in numberToChrom()  argument
442 			assert((baseChrom&CHROM_MASK_LOW)==0) : Integer.toHexString(number)+", baseChrom="+baseChrom;  in numberToChrom()
443 			assert(baseChrom>=0) : Integer.toHexString(number)+", baseChrom="+baseChrom;  in numberToChrom()
448 			out=out+(baseChrom&CHROM_MASK_HIGH);  in numberToChrom()
454 		public final int baseChrom(int chrom){return Tools.max(0, chrom&CHROM_MASK_HIGH);}  in baseChrom()  method in IndexMaker4.BlockMaker