63     bca->nqual = 60;  in bcf_call_init()
64     bca->ref_mq  = (int*) malloc(bca->nqual*sizeof(int));  in bcf_call_init()
65     bca->alt_mq  = (int*) malloc(bca->nqual*sizeof(int));  in bcf_call_init()
66     bca->iref_mq = (int*) malloc(bca->nqual*sizeof(int));  in bcf_call_init()
67     bca->ialt_mq = (int*) malloc(bca->nqual*sizeof(int));  in bcf_call_init()
68     bca->ref_bq  = (int*) malloc(bca->nqual*sizeof(int));  in bcf_call_init()
69     bca->alt_bq  = (int*) malloc(bca->nqual*sizeof(int));  in bcf_call_init()
70     bca->fwd_mqs = (int*) malloc(bca->nqual*sizeof(int));  in bcf_call_init()
71     bca->rev_mqs = (int*) malloc(bca->nqual*sizeof(int));  in bcf_call_init()
88     bca->nqual = 0;  in bcf_call_destroy()
150     memset(bca->ref_mq,0,sizeof(int)*bca->nqual);  in bcf_callaux_clean()
151     memset(bca->alt_mq,0,sizeof(int)*bca->nqual);  in bcf_callaux_clean()
152     memset(bca->iref_mq,0,sizeof(int)*bca->nqual);  in bcf_callaux_clean()
153     memset(bca->ialt_mq,0,sizeof(int)*bca->nqual);  in bcf_callaux_clean()
154     memset(bca->ref_bq,0,sizeof(int)*bca->nqual);  in bcf_callaux_clean()
155     memset(bca->alt_bq,0,sizeof(int)*bca->nqual);  in bcf_callaux_clean()
156     memset(bca->fwd_mqs,0,sizeof(int)*bca->nqual);  in bcf_callaux_clean()
157     memset(bca->rev_mqs,0,sizeof(int)*bca->nqual);  in bcf_callaux_clean()
207     double nqual_over_60 = bca->nqual / 60.0;  in bcf_call_glfgen()
930                                            bca->nqual,1,1);  in bcf_call_combine()
939                                            bca->nqual,1,1);  in bcf_call_combine()
941                                            bca->nqual,0,1);  in bcf_call_combine()
943                                            bca->nqual,0,1);  in bcf_call_combine()
954                                        bca->nqual, 1, 0);  in bcf_call_combine()
956                                        bca->nqual, 0, 0);  in bcf_call_combine()
958                                        bca->nqual, 0, 0);  in bcf_call_combine()
965     call->mwu_mq_cdf  = calc_mwu_bias_cdf(bca->ref_mq,  bca->alt_mq,  bca->nqual);  in bcf_call_combine()
966     call->mwu_bq_cdf  = calc_mwu_bias_cdf(bca->ref_bq,  bca->alt_bq,  bca->nqual);  in bcf_call_combine()
967     call->mwu_mqs_cdf = calc_mwu_bias_cdf(bca->fwd_mqs, bca->rev_mqs, bca->nqual);  in bcf_call_combine()