Lines Matching refs:clstr
266 -d length of description in .clstr file, default 20 if set to 0, it takes the fasta defline and sto…
283 -p 1 or 0, default 0 if set to 1, print alignment overlap in .clstr file
311 The output .clstr file looks like
612 clstr_merge.pl nr90.clstr month-new.clstr > temp.clstr
613 cat temp.clstr month90.clstr > this_month_nr90.clstr
666 plot_len.pl input.clstr \
681 Size # seq #clstr 10-59 60-149 150-499 500-1999 2000-up
693 \subsection{clstr\_sort\_by.pl }
695 This script sort clusters in .clstr file by length, size
700 Clstr_sort_by.pl input.clstr no > input_sort.clstr
704 \subsection{clstr\_sort\_prot\_by.pl }
706 This script sort sequences within clusters in .clstr file by length, name, etc.
711 Clstr_sort_prot_by.pl input.clstr id > input_sort.clstr
715 \subsection{clstr\_merge.pl }
717 It merges two or more .clstr files. The cluster orders need to be identical.
724 clstr_merge.pl db2new.clstr db3new.clstr > db23new.clstr
727 \subsection{clstr\_merge\_noorder.pl }
729 It merges two or more .clstr files. The cluster orders do not have to be identical.
736 clstr_merge_noorder.pl db2new.clstr db3new.clstr > db23new.clstr
739 \subsection{clstr\_ renumber.pl }
741 It renumbers clusters and sequences within clusters in .clstr file after merge
747 Clstr_renumber.pl input.clstr > input_ren.clstr
750 \subsection{clstr\_rev.pl }
752 It combines a .clstr file with its parent .clstr file
759 clstr_rev.pl nr90.clstr nr60.clstr > nr60_from90.clstr
761 clstr_rev.pl nr60_from90.clstr nr30.clstr > nr30_from90.clstr
766 This script reads the .clstr file, it generates a separate fasta file for each cluster over certain…
772 make_multi_seq.pl seq_db dbout.clstr multi-seq 20
784 clstr2xml.pl [-len|-size] input1.clstr [input2.clstr input3.clstr ...]