35   void Residue::set_has_bonds(bool tf) {  in set_has_bonds()
57   bool Residue::has_atom(Residue::Atom_label ial) const {  in has_atom()
58     Residue::Atom_label al= Residue_data::fix_atom_label(label_, ial);  in has_atom()
71   bool Residue::can_have_atom(Residue::Atom_label ial) const {  in can_have_atom()
73     Residue::Atom_label al= Residue_data::fix_atom_label(label_, ial);  in can_have_atom()
88   const Atom &Residue::atom(Residue::Atom_label al) const {  in atom()
89     Residue::Atom_label fal= Residue_data::fix_atom_label(label_, al);  in atom()
102   void Residue::set_atom(Residue::Atom_label ial, const Atom &a) {  in set_atom()
103     Residue::Atom_label al= Residue_data::fix_atom_label(label_, ial);  in set_atom()
135   Residue::Type Residue::type() const {  in type()
139   void Residue::dump(std::ostream &out) const {  in dump()
141 … const std::vector<Residue::Atom_label> &valid_atoms= Residue_data::amino_acid_data_[type()].atoms;  in dump()
143       Residue::Atom_label al= valid_atoms[i];  in dump()
144       out << Residue::atom_label_string(al); //Residue::write_atom_label(al, out);  in dump()
154     bool operator()(const std::pair<Residue::Atom_label, Atom> &a,  in operator ()()
155 		    const std::pair<Residue::Atom_label, Atom>&b) const {  in operator ()()
160   void Residue::write(char chain, std::ostream &out) const {  in write()
176 		static_cast<unsigned int>(a.index()), Residue::atom_label_string(al).c_str(), alt,  in write()
177 …Residue::type_string(type()).c_str(), chain, static_cast<unsigned int>(index()), insertion_residue…  in write()
185   Atom::Index Residue::last_atom_index() const {  in last_atom_index()
195   unsigned int Residue::number_of_atoms() const {  in number_of_atoms()
199   unsigned int Residue::number_of_bonds() const {  in number_of_bonds()
204   void Residue::set_index(Residue::Index i) {  in set_index()
209   Residue::Atom_label Residue::atom_label(Atom::Index model_index) const{  in atom_label()
221   Atom::Index Residue::index(Residue::Atom_label al) const {  in index()
225   Residue::Atoms_iterator Residue::atoms_iterator_from_index(Atom::Index ind) {  in atoms_iterator_from_index()
233   Residue::Const_atoms_iterator Residue::atoms_iterator_from_index(Atom::Index ind) const {  in atoms_iterator_from_index()
245   Residue::Residue(Type al): atoms_(20), label_(al){  in Residue()  function in dsrpdb::Residue
251   Point Residue::sidechain_point() const {  in sidechain_point()
280   Residue::Atom_label Residue::atom_label(const char *nm) {  in atom_label()
291     return Residue::AL_OTHER;  in atom_label()
298   Atom::Type Residue::element(Atom_label al){  in element()
300     for (unsigned int i=0; Residue_data::atom_name_data_[i].l != Residue::AL_INVALID; ++i){  in element()
313   std::string Residue::atom_label_string(Atom_label al) {  in atom_label_string()
315     for (unsigned int i=0; Residue_data::atom_name_data_[i].l != Residue::AL_INVALID; ++i){  in atom_label_string()
333   Residue::Type Residue::type(const std::string &s){  in type()
372   std::string Residue::type_string(Residue::Type rl){  in type_string()