Lines Matching +defs:beg +defs:reg
565 static void _set_variant_boundaries(bcf1_t *rec, hts_pos_t *beg, hts_pos_t *end) in _set_variant_boundaries()
659 hts_pos_t beg, end; in _reader_fill_buffer() local
772 hts_pos_t beg, end; in next_line() local
836 bcf_sr_regions_t *reg = readers->regions; in bcf_sr_seek_start() local
939 static int _regions_add(bcf_sr_regions_t *reg, const char *chr, hts_pos_t start, hts_pos_t end) in _regions_add()
985 static void regions_merge(region_t *reg) in regions_merge()
1000 void _regions_sort_and_merge(bcf_sr_regions_t *reg) in _regions_sort_and_merge()
1015 bcf_sr_regions_t *reg = (bcf_sr_regions_t *) calloc(1, sizeof(bcf_sr_regions_t)); in _regions_init_string() local
1135 bcf_sr_regions_t *reg; in bcf_sr_regions_init() local
1210 void bcf_sr_regions_destroy(bcf_sr_regions_t *reg) in bcf_sr_regions_destroy()
1235 int bcf_sr_regions_seek(bcf_sr_regions_t *reg, const char *seq) in bcf_sr_regions_seek()
1256 static int advance_creg(region_t *reg) in advance_creg()
1265 int bcf_sr_regions_next(bcf_sr_regions_t *reg) in bcf_sr_regions_next()
1354 static int _regions_match_alleles(bcf_sr_regions_t *reg, int als_idx, bcf1_t *rec) in _regions_match_alleles()
1408 int bcf_sr_regions_overlap(bcf_sr_regions_t *reg, const char *seq, hts_pos_t start, hts_pos_t end) in bcf_sr_regions_overlap()
1436 int bcf_sr_regions_flush(bcf_sr_regions_t *reg) in bcf_sr_regions_flush()