Lines Matching refs:cinv_evec
1028 Map<Matrix4cd,Aligned> inv_evec(cinv_evec); in decomposeRateMatrixEigen3lib()
1111 …cinv_evec[1] = cinv_evec[2] = cinv_evec[3] = cinv_evec[5] = cinv_evec[6] = cinv_evec[9] = cinv_eve… in decomposeRateMatrixClosedForm()
1112 cinv_evec[0] = cinv_evec[4] = cinv_evec[8] = cinv_evec[12] = 0.25; in decomposeRateMatrixClosedForm()
1113 cinv_evec[7] = cinv_evec[10] = cinv_evec[13] = 0.75; in decomposeRateMatrixClosedForm()
1146 cinv_evec[0] = cinv_evec[4] = cinv_evec[5] = cinv_evec[8] = cinv_evec[12] = cinv_evec[13] = 0.25; in decomposeRateMatrixClosedForm()
1147 cinv_evec[1] = cinv_evec[9] = -0.25; in decomposeRateMatrixClosedForm()
1148 cinv_evec[2] = cinv_evec[10] = cinv_evec[15] = 0.; in decomposeRateMatrixClosedForm()
1149 cinv_evec[3] = cinv_evec[6] = -0.5; in decomposeRateMatrixClosedForm()
1150 cinv_evec[14] = cinv_evec[11] = 0.5; in decomposeRateMatrixClosedForm()
1182 …cinv_evec[0] =cinv_evec[3] =cinv_evec[4] =cinv_evec[5] =cinv_evec[8] =cinv_evec[10] =cinv_evec[12]… in decomposeRateMatrixClosedForm()
1183 cinv_evec[1] =cinv_evec[2] =cinv_evec[6] =cinv_evec[7] =cinv_evec[9] =cinv_evec[11] = -0.25; in decomposeRateMatrixClosedForm()
1219 …cinv_evec[0] =cinv_evec[4] =cinv_evec[5] =cinv_evec[8] =cinv_evec[12] =cinv_evec[13] =cinv_evec[14… in decomposeRateMatrixClosedForm()
1220 cinv_evec[1] =cinv_evec[6] =cinv_evec[7] =cinv_evec[9] = -0.25; in decomposeRateMatrixClosedForm()
1221 cinv_evec[2] =cinv_evec[11] =complex<double> (0., -0.25); in decomposeRateMatrixClosedForm()
1222 cinv_evec[3] =cinv_evec[10] = complex<double> (0., 0.25); in decomposeRateMatrixClosedForm()
1255 cinv_evec[0] =cinv_evec[4] =cinv_evec[5] =cinv_evec[8] =cinv_evec[12] =cinv_evec[13] = 0.25; in decomposeRateMatrixClosedForm()
1256 cinv_evec[1] =cinv_evec[9] = -0.25; in decomposeRateMatrixClosedForm()
1257 cinv_evec[2] =cinv_evec[7] =cinv_evec[10] =cinv_evec[15] = 0.; in decomposeRateMatrixClosedForm()
1258 cinv_evec[3] =cinv_evec[6] = -0.5; in decomposeRateMatrixClosedForm()
1259 cinv_evec[11] =cinv_evec[14] = 0.5; in decomposeRateMatrixClosedForm()
1297 cinv_evec[0] =cinv_evec[5] =cinv_evec[8] =cinv_evec[13] = 0.25 + 0.25*d/deno2; in decomposeRateMatrixClosedForm()
1298 cinv_evec[1] =cinv_evec[9] = -cinv_evec[0]; in decomposeRateMatrixClosedForm()
1299 cinv_evec[4] =cinv_evec[12] = -cinv_evec[0] + 0.5; in decomposeRateMatrixClosedForm()
1300 cinv_evec[14] =cinv_evec[11] = 0.5; in decomposeRateMatrixClosedForm()
1301 cinv_evec[3] =cinv_evec[6] = -0.5; in decomposeRateMatrixClosedForm()
1302 cinv_evec[2] =cinv_evec[7] =cinv_evec[10] =cinv_evec[15] = 0.; in decomposeRateMatrixClosedForm()
1349 cinv_evec[0] = 0.25 + auxd + auxe1; in decomposeRateMatrixClosedForm()
1350 cinv_evec[1] = cinv_evec[2] = cinv_evec[3] = -cinv_evec[0]; in decomposeRateMatrixClosedForm()
1351 cinv_evec[4] = 0.25 - auxd +auxe2; in decomposeRateMatrixClosedForm()
1352 cinv_evec[5] = cinv_evec[6] = -cinv_evec[4]; in decomposeRateMatrixClosedForm()
1353 cinv_evec[7] = cinv_evec[6] + 1.; in decomposeRateMatrixClosedForm()
1354 cinv_evec[8] = 0.25 + auxd - auxe1; in decomposeRateMatrixClosedForm()
1355 cinv_evec[9] = cinv_evec[11] = -cinv_evec[8] ; in decomposeRateMatrixClosedForm()
1356 cinv_evec[10] = cinv_evec[9] + 1.; in decomposeRateMatrixClosedForm()
1357 cinv_evec[12] = 0.25 - auxd - auxe2; in decomposeRateMatrixClosedForm()
1358 cinv_evec[14] = cinv_evec[15] = -cinv_evec[12]; in decomposeRateMatrixClosedForm()
1359 cinv_evec[13] = cinv_evec[14] + 1.; in decomposeRateMatrixClosedForm()
1402 cinv_evec[0] = 0.25 + 0.25*d/deno2; in decomposeRateMatrixClosedForm()
1403 cinv_evec[8] = cinv_evec[5] = cinv_evec[13] = cinv_evec[0]; in decomposeRateMatrixClosedForm()
1404 cinv_evec[1] = cinv_evec[9] = -cinv_evec[0]; in decomposeRateMatrixClosedForm()
1405 cinv_evec[2] = cinv_evec[10] = cinv_evec[7] = cinv_evec[15] = 0.; in decomposeRateMatrixClosedForm()
1406 cinv_evec[3] = cinv_evec[6] = -0.5; in decomposeRateMatrixClosedForm()
1407 cinv_evec[11] = cinv_evec[14] = 0.5; in decomposeRateMatrixClosedForm()
1408 cinv_evec[4] = -cinv_evec[0] + 0.5; in decomposeRateMatrixClosedForm()
1409 cinv_evec[12] = cinv_evec[4]; in decomposeRateMatrixClosedForm()
1451 cinv_evec[0] = cinv_evec[8] = cinv_evec[5] = cinv_evec[13] = 0.25 + auxd; in decomposeRateMatrixClosedForm()
1452 cinv_evec[2] = cinv_evec[11] = cinv_evec[6] = cinv_evec[7] = -0.25; in decomposeRateMatrixClosedForm()
1453 cinv_evec[3] = cinv_evec[10] = cinv_evec[14] = cinv_evec[15] = 0.25; in decomposeRateMatrixClosedForm()
1454 cinv_evec[1] = cinv_evec[9] = -cinv_evec[0]; in decomposeRateMatrixClosedForm()
1455 cinv_evec[4] = cinv_evec[12] = 0.25 - auxd; in decomposeRateMatrixClosedForm()
1495 cinv_evec[0] =cinv_evec[8] =cinv_evec[5] =cinv_evec[13] = 0.25 + auxd; in decomposeRateMatrixClosedForm()
1496 cinv_evec[1] =cinv_evec[9] =-cinv_evec[0]; in decomposeRateMatrixClosedForm()
1497 cinv_evec[4] =cinv_evec[12] = 0.25 - auxd; in decomposeRateMatrixClosedForm()
1498 cinv_evec[10] =cinv_evec[3] = complex<double> (0, 0.25); in decomposeRateMatrixClosedForm()
1499 cinv_evec[2] =cinv_evec[11] = complex<double> (0, -0.25); in decomposeRateMatrixClosedForm()
1500 cinv_evec[6] =cinv_evec[7] = -0.25; in decomposeRateMatrixClosedForm()
1501 cinv_evec[14] =cinv_evec[15] = 0.25; in decomposeRateMatrixClosedForm()
1549 cinv_evec[1] = cinv_evec[9] = -0.25 - auxd; in decomposeRateMatrixClosedForm()
1550 cinv_evec[5] = cinv_evec[13] = - cinv_evec[1]; in decomposeRateMatrixClosedForm()
1551 cinv_evec[2] = -auxe1; in decomposeRateMatrixClosedForm()
1552 cinv_evec[10] = - cinv_evec[2]; in decomposeRateMatrixClosedForm()
1553 cinv_evec[6] = -0.5 - auxe2; in decomposeRateMatrixClosedForm()
1554 cinv_evec[14] = -cinv_evec[6]; in decomposeRateMatrixClosedForm()
1555 cinv_evec[3] = -0.5 -auxe1; in decomposeRateMatrixClosedForm()
1556 cinv_evec[11] = - cinv_evec[3]; in decomposeRateMatrixClosedForm()
1557 cinv_evec[7] = -auxe2; in decomposeRateMatrixClosedForm()
1558 cinv_evec[15] = -cinv_evec[7]; in decomposeRateMatrixClosedForm()
1559 cinv_evec[0] = 0.25 + auxe1 + auxd; in decomposeRateMatrixClosedForm()
1560 cinv_evec[4] = 0.25 + auxe2 -auxd; in decomposeRateMatrixClosedForm()
1561 cinv_evec[8] = 0.25 - auxe1 + auxd; in decomposeRateMatrixClosedForm()
1562 cinv_evec[12] = 0.25 - auxe2 - auxd; in decomposeRateMatrixClosedForm()
1610 cinv_evec[2] = cinv_evec[6] =-0.25 - auxs; in decomposeRateMatrixClosedForm()
1611 cinv_evec[10] = cinv_evec[14] = - cinv_evec[2]; in decomposeRateMatrixClosedForm()
1612 cinv_evec[3] = cinv_evec[15] = 0.25 + auxr; in decomposeRateMatrixClosedForm()
1613 cinv_evec[7] = cinv_evec[11] =-cinv_evec[3]; in decomposeRateMatrixClosedForm()
1614 cinv_evec[0] = 0.25 + auxs - auxr; in decomposeRateMatrixClosedForm()
1615 cinv_evec[4] = 0.25 + auxs + auxr; in decomposeRateMatrixClosedForm()
1616 cinv_evec[8] = 0.5 - cinv_evec[0]; in decomposeRateMatrixClosedForm()
1617 cinv_evec[12] = 0.5 - cinv_evec[4]; in decomposeRateMatrixClosedForm()
1618 cinv_evec[1] = cinv_evec[9] = -0.25; in decomposeRateMatrixClosedForm()
1619 cinv_evec[5] = cinv_evec[13] = 0.25; in decomposeRateMatrixClosedForm()
1668 cinv_evec[0] =cinv_evec[4] =cinv_evec[8] =cinv_evec[12] = 0.25; in decomposeRateMatrixClosedForm()
1669 cinv_evec[2] =cinv_evec[6] = -0.25 + 0.25*(f1 + f2)/(3.*a2 - b); in decomposeRateMatrixClosedForm()
1670 cinv_evec[10] =cinv_evec[14] = - cinv_evec[2]; in decomposeRateMatrixClosedForm()
1671 cinv_evec[3] =cinv_evec[15] = 0.25 + 0.25*(f1 - f2)/(3.*a2 + b); in decomposeRateMatrixClosedForm()
1672 cinv_evec[11] =cinv_evec[7] = -cinv_evec[3]; in decomposeRateMatrixClosedForm()
1673 cinv_evec[1] = -cinv_evec[0]-cinv_evec[2]-cinv_evec[3]; in decomposeRateMatrixClosedForm()
1674 cinv_evec[5] = -cinv_evec[4]-cinv_evec[6] - cinv_evec[7]; in decomposeRateMatrixClosedForm()
1675 cinv_evec[9] = -cinv_evec[1] - 0.5; in decomposeRateMatrixClosedForm()
1676 cinv_evec[13] = -cinv_evec[5] +0.5; in decomposeRateMatrixClosedForm()
1727 cinv_evec[0] =cinv_evec[4] =cinv_evec[8] =cinv_evec[12] = 0.25; in decomposeRateMatrixClosedForm()
1729 cinv_evec[2] = -0.25 + 0.25*(g1 + g2)/deno2; in decomposeRateMatrixClosedForm()
1730 cinv_evec[6] =-0.5 - cinv_evec[2]; in decomposeRateMatrixClosedForm()
1731 cinv_evec[10] =-cinv_evec[6]; in decomposeRateMatrixClosedForm()
1732 cinv_evec[14] = -cinv_evec[2]; in decomposeRateMatrixClosedForm()
1734 cinv_evec[3] = 0.25 - 0.25*(g1 - g2)/deno3; in decomposeRateMatrixClosedForm()
1735 cinv_evec[7] =-cinv_evec[3]; in decomposeRateMatrixClosedForm()
1736 cinv_evec[11] =cinv_evec[3] - 0.5; in decomposeRateMatrixClosedForm()
1737 cinv_evec[15] = - cinv_evec[11]; in decomposeRateMatrixClosedForm()
1739 cinv_evec[1] = cinv_evec[9] = -cinv_evec[0]-cinv_evec[2]-cinv_evec[3]; in decomposeRateMatrixClosedForm()
1740 cinv_evec[5] = cinv_evec[13] = -cinv_evec[1]; in decomposeRateMatrixClosedForm()
1788 cinv_evec[2] =cinv_evec[10] = 0.; in decomposeRateMatrixClosedForm()
1789 cinv_evec[5] =cinv_evec[13] = 0.25; in decomposeRateMatrixClosedForm()
1790 cinv_evec[1] =cinv_evec[9] = -0.25; in decomposeRateMatrixClosedForm()
1791 cinv_evec[3] =-0.5*e1/(2.*a + a2 +d1); in decomposeRateMatrixClosedForm()
1792 cinv_evec[0] = 0.25 -cinv_evec[3]; in decomposeRateMatrixClosedForm()
1793 cinv_evec[4] = 0.25 + 0.5*e2/(2.*a + a2 - d1); in decomposeRateMatrixClosedForm()
1794 cinv_evec[6] = -cinv_evec[4] - 0.25; in decomposeRateMatrixClosedForm()
1795 cinv_evec[8] = -cinv_evec[0] + 0.5; in decomposeRateMatrixClosedForm()
1796 cinv_evec[12] = -cinv_evec[4] + 0.5; in decomposeRateMatrixClosedForm()
1797 cinv_evec[11] = -cinv_evec[3]; in decomposeRateMatrixClosedForm()
1798 cinv_evec[14] = -cinv_evec[6]; in decomposeRateMatrixClosedForm()
1840 cinv_evec[0] =cinv_evec[4] =cinv_evec[8] =cinv_evec[12] = 0.25; in decomposeRateMatrixClosedForm()
1841 cinv_evec[2] =cinv_evec[7] =cinv_evec[10] =cinv_evec[15] = 0.0; in decomposeRateMatrixClosedForm()
1843 cinv_evec[3] = 0.5*f1/(3.*a2 + d1); in decomposeRateMatrixClosedForm()
1844 cinv_evec[1] = - cinv_evec[3] - 0.25; in decomposeRateMatrixClosedForm()
1845 cinv_evec[11] =-cinv_evec[3]; in decomposeRateMatrixClosedForm()
1846 cinv_evec[9] =cinv_evec[3] - 0.25; in decomposeRateMatrixClosedForm()
1849 cinv_evec[5] = 0.25 - auxf2; in decomposeRateMatrixClosedForm()
1850 cinv_evec[6] = -0.5 + auxf2; in decomposeRateMatrixClosedForm()
1851 cinv_evec[13] = 0.25 + auxf2; in decomposeRateMatrixClosedForm()
1852 cinv_evec[14] = 0.5 - auxf2; in decomposeRateMatrixClosedForm()
1902 cinv_evec[0] =cinv_evec[4] =cinv_evec[8] =cinv_evec[12] = 0.25; in decomposeRateMatrixClosedForm()
1903 cinv_evec[2] =cinv_evec[10] = 0.5*g2 /deno2; in decomposeRateMatrixClosedForm()
1904 cinv_evec[7] =cinv_evec[15] = -0.5*g1 /deno3; in decomposeRateMatrixClosedForm()
1905 cinv_evec[1] = cinv_evec[9] = -0.25 - cinv_evec[2]; in decomposeRateMatrixClosedForm()
1906 cinv_evec[3] = -0.5 -cinv_evec[7]; in decomposeRateMatrixClosedForm()
1907 cinv_evec[11] = 0.5 - cinv_evec[7]; in decomposeRateMatrixClosedForm()
1908 cinv_evec[5] = cinv_evec[13] = 0.25 + cinv_evec[2]; in decomposeRateMatrixClosedForm()
1909 cinv_evec[6] = -0.5 -cinv_evec[2]; in decomposeRateMatrixClosedForm()
1910 cinv_evec[14] = 0.5 - cinv_evec[2]; in decomposeRateMatrixClosedForm()
1962 cinv_evec[0] =cinv_evec[8] = 0.25 + 0.25*d/(a-a2); in decomposeRateMatrixClosedForm()
1963 cinv_evec[4] =cinv_evec[12] = 0.5 - cinv_evec[0]; in decomposeRateMatrixClosedForm()
1964 cinv_evec[2] =cinv_evec[10] =auxg2; in decomposeRateMatrixClosedForm()
1965 cinv_evec[6] = -0.5 - auxg2; in decomposeRateMatrixClosedForm()
1966 cinv_evec[14] = 0.5 - auxg2; in decomposeRateMatrixClosedForm()
1967 cinv_evec[3] = -0.5 + auxg1; in decomposeRateMatrixClosedForm()
1968 cinv_evec[11] = 0.5 + auxg1; in decomposeRateMatrixClosedForm()
1969 cinv_evec[7] =cinv_evec[15] = - auxg1; in decomposeRateMatrixClosedForm()
1970 cinv_evec[1] =cinv_evec[9] = -cinv_evec[0] -cinv_evec[2]; in decomposeRateMatrixClosedForm()
1971 cinv_evec[13] =cinv_evec[5] =-cinv_evec[1]; in decomposeRateMatrixClosedForm()
2001 zero += cinv_evec[i*num_states+k] * cevec[k*num_states+j]; in decomposeRateMatrixClosedForm()
2037 cout << " " << cinv_evec[i*4+j]; in decomposeRateMatrixClosedForm()