Lines Matching refs:area_taxa
946 int nareas = area_taxa.size(); in findMinKArea_LP()
1151 if (area_taxa.empty()) { in findPDArea_LP()
1152 computePD(params, area_taxa, pd_more); in findPDArea_LP()
1156 for (SplitSet::iterator it = area_taxa.begin(); it != area_taxa.end(); it++) in findPDArea_LP()
1188 int nareas = area_taxa.size(); in findPDArea_LP()
1317 int nareas = area_taxa.size(); in calcPDArea()
1321 sp += *area_taxa[i]; in calcPDArea()
1329 if (area_taxa[i]->containTaxon(taxon)) { in isUniquelyCovered()
1343 tax_cover += *(area_taxa[*it]); in transformLP_Area_Coverage()
1368 if (area_taxa[i]->containTaxon(j)) { in transformLP_Area_Coverage()
1427 taxon_coverage += *(area_taxa[i]); in findMinAreas()
1462 for (SplitSet::iterator it = area_taxa.begin(); it != area_taxa.end(); it++) { in checkAreaCoverage()
1510 int nareas = area_taxa.size(); in lpObjectiveMinK()
1553 nvars = area_taxa.size(); in lpK_BudgetConstraint()
1599 int nareas = area_taxa.size(); in lpBoundaryConstraint()
1622 int nareas = area_taxa.size(); in lpSplitConstraint_RS()
1636 if (sp->overlap(*area_taxa[j])) { in lpSplitConstraint_RS()
1656 if (sp->overlap(*area_taxa[j])) { in lpSplitConstraint_RS()
1796 nvars = area_taxa.size(); in lpVariableBinary()
1845 nvars = area_taxa.size(); in lpVariableBinary()
1865 if (area_taxa[j]->containTaxon(*it)) { in lpInitialArea()
1915 int nareas = area_taxa.size(); in checkYValue_Area()
1925 if (sp->overlap(*area_taxa[j])) { in checkYValue_Area()
1932 if (sp->overlap(*area_taxa[j])) { count2[i]++; id2 = j; } in checkYValue_Area()