319         qNumber = (size_t)ti[index + 1],  in newviewParsimonyIterativeFast()  local
343 …               left[k]  = &(pr->partitionData[model]->parsVect[(width * 2 * qNumber) + width * k]);  in newviewParsimonyIterativeFast()
385 …               left[k]  = &(pr->partitionData[model]->parsVect[(width * 4 * qNumber) + width * k]);  in newviewParsimonyIterativeFast()
439 …              left[k]  = &(pr->partitionData[model]->parsVect[(width * 20 * qNumber) + width * k]);  in newviewParsimonyIterativeFast()
484 …          left[k]  = &(pr->partitionData[model]->parsVect[(width * states * qNumber) + width * k]);  in newviewParsimonyIterativeFast()
520 …imonyScore[pNumber] = totalScore + tr->parsimonyScore[rNumber] + tr->parsimonyScore[qNumber];        in newviewParsimonyIterativeFast()
533     qNumber = (size_t)tr->ti[2];  in evaluateParsimonyIterativeFast()  local
545   sum = tr->parsimonyScore[pNumber] + tr->parsimonyScore[qNumber];  in evaluateParsimonyIterativeFast()
565 …               left[k]  = &(pr->partitionData[model]->parsVect[(width * 2 * qNumber) + width * k]);  in evaluateParsimonyIterativeFast()
593 …               left[k]  = &(pr->partitionData[model]->parsVect[(width * 4 * qNumber) + width * k]);  in evaluateParsimonyIterativeFast()
623 …              left[k]  = &(pr->partitionData[model]->parsVect[(width * 20 * qNumber) + width * k]);  in evaluateParsimonyIterativeFast()
661 …          left[k]  = &(pr->partitionData[model]->parsVect[(width * states * qNumber) + width * k]);  in evaluateParsimonyIterativeFast()
711         qNumber = (size_t)ti[index + 1],  in newviewParsimonyIterativeFast()  local
742 …               left[k]  = &(pr->partitionData[model]->parsVect[(width * 2 * qNumber) + width * k]);  in newviewParsimonyIterativeFast()
773 …               left[k]  = &(pr->partitionData[model]->parsVect[(width * 4 * qNumber) + width * k]);  in newviewParsimonyIterativeFast()
826 …              left[k]  = &(pr->partitionData[model]->parsVect[(width * 20 * qNumber) + width * k]);  in newviewParsimonyIterativeFast()
869 …          left[k]  = &(pr->partitionData[model]->parsVect[(width * states * qNumber) + width * k]);  in newviewParsimonyIterativeFast()
896 …imonyScore[pNumber] = totalScore + tr->parsimonyScore[rNumber] + tr->parsimonyScore[qNumber];        in newviewParsimonyIterativeFast()
905     qNumber = (size_t)tr->ti[2];  in evaluateParsimonyIterativeFast()  local
917   sum = tr->parsimonyScore[pNumber] + tr->parsimonyScore[qNumber];  in evaluateParsimonyIterativeFast()
940 …               left[k]  = &(pr->partitionData[model]->parsVect[(width * 2 * qNumber) + width * k]);  in evaluateParsimonyIterativeFast()
971 …               left[k]  = &(pr->partitionData[model]->parsVect[(width * 4 * qNumber) + width * k]);  in evaluateParsimonyIterativeFast()
1001 …              left[k]  = &(pr->partitionData[model]->parsVect[(width * 20 * qNumber) + width * k]);  in evaluateParsimonyIterativeFast()
1036 …          left[k]  = &(pr->partitionData[model]->parsVect[(width * states * qNumber) + width * k]);  in evaluateParsimonyIterativeFast()
1186         qNumber = tr->constraintVector[q->number],  in testInsertParsimony()  local
1197           if(qNumber == -9)  in testInsertParsimony()
1198             qNumber = checkerPars(tr, q);  in testInsertParsimony()
1203           if(pNumber == rNumber || pNumber == qNumber)  in testInsertParsimony()