Lines Matching refs:cpmx2
544 static void match_calc_add( double **scoreingmtx, double *match, double **cpmx1, double **cpmx2, in… in match_calc_add() argument
564 if( cpmx2[l][j] ) in match_calc_add()
566 cpmxpd[j][count] = cpmx2[l][j]; in match_calc_add()
615 if( cpmx2[l][j] ) in match_calc_add()
617 cpmxpd[count][j] = cpmx2[l][j]; in match_calc_add()
642 static void match_calc( double **n_dynamicmtx, double *match, double **cpmx1, double **cpmx2, int i… in match_calc() argument
662 if( cpmx2[l][j] ) in match_calc()
664 cpmxpd[j][count] = cpmx2[l][j]; in match_calc()
713 if( cpmx2[l][j] ) in match_calc()
715 cpmxpd[count][j] = cpmx2[l][j]; in match_calc()
1051 static TLS double **cpmx2; in A__align() local
1118 FreeFloatMtx( cpmx2 ); in A__align()
1242 FreeFloatMtx( cpmx2 ); in A__align()
1276 cpmx2 = AllocateFloatMtx( nalphabets, ll2+2 ); in A__align()
1347 cpmx_calc_new( seq2, cpmx2, eff2, lgth2, jcyc ); in A__align()
1419 match_calc( n_dynamicmtx, initverticalw, cpmx2, cpmx1, 0, lgth1, doublework, intwork, 1 ); in A__align()
1423 match_calc( n_dynamicmtx, currentw, cpmx1, cpmx2, 0, lgth2, doublework, intwork, 1 ); in A__align()
1518 match_calc( n_dynamicmtx, currentw, cpmx1, cpmx2, i, lgth2, doublework, intwork, 0 ); in A__align()