Lines Matching refs:cpmx2
431 static void match_calc( double *match, double **cpmx1, double **cpmx2, int i1, int lgth2, double **… in match_calc() argument
450 if( cpmx2[l][j] ) in match_calc()
452 cpmxpd[j][count] = cpmx2[l][j]; in match_calc()
499 if( cpmx2[l][j] ) in match_calc()
501 cpmxpd[count][j] = cpmx2[l][j]; in match_calc()
568 static void match_calc_add( double **scoreingmtx, double *match, double **cpmx1, double **cpmx2, in… in match_calc_add() argument
588 if( cpmx2[l][j] ) in match_calc_add()
590 cpmxpd[j][count] = cpmx2[l][j]; in match_calc_add()
639 if( cpmx2[l][j] ) in match_calc_add()
641 cpmxpd[count][j] = cpmx2[l][j]; in match_calc_add()
989 static TLS double **cpmx2; in partA__align() local
1056 FreeFloatMtx( cpmx2 ); in partA__align()
1174 FreeFloatMtx( cpmx2 ); in partA__align()
1208 cpmx2 = AllocateFloatMtx( nalphabets, ll2+2 ); in partA__align()
1262 cpmx_calc_new( seq2, cpmx2, eff2, lgth2, jcyc ); in partA__align()
1323 match_calc( initverticalw, cpmx2, cpmx1, 0, lgth1, doublework, intwork, 1 ); in partA__align()
1328 match_calc( currentw, cpmx1, cpmx2, 0, lgth2, doublework, intwork, 1 ); in partA__align()
1410 match_calc( currentw, cpmx1, cpmx2, i, lgth2, doublework, intwork, 0 ); in partA__align()