Lines Matching refs:numCompressedChars

5777     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_Gen()
5986     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_Gen_SSE()
6142     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_Gen_GibbsGamma()
6269     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_NUC4()
6383     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_NUC4_GibbsGamma()
6653     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_NUC4_FMA()
6817     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_NUC4_AVX()
6989     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_NUC4_SSE()
7139     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_NY98()
7214     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_NY98_SSE()
7296     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_Res()
7395     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_Res_SSE()
7506     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_Std()
7700     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_Pars()
7783     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_Pars()
7869     nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart;  in Likelihood_ParsStd()