149 …         foundComma, foundBeta, foundAaSetting, modelIsFixed, linkNum, foundLeftPar, tempNumStates,  variable
4699                 tempNumStates = 0;  in DoPrsetParm()
4742                 tempNum[tempNumStates++] = tempD;  in DoPrsetParm()
4743                 if (tempNumStates == 1 && !strcmp(tempStr,"Dirichlet"))  in DoPrsetParm()
4745                 else if (tempNumStates < 6)  in DoPrsetParm()
4765                                 if (tempNumStates == 1)  in DoPrsetParm()
4834                 tempNumStates = 0;  in DoPrsetParm()
4877                 tempStateFreqs[tempNumStates++] = tempD;  in DoPrsetParm()
4878                 if (tempNumStates == 1 && !strcmp(tempStr,"Dirichlet"))  in DoPrsetParm()
4880                 else if (tempNumStates < 190)  in DoPrsetParm()
4900                                 if (tempNumStates == 1)  in DoPrsetParm()
6581                 tempNumStates = 0;  in DoPrsetParm()
6588                 tempStateFreqs[tempNumStates++] = tempD;  in DoPrsetParm()
6611                             if (tempNumStates == 1)  in DoPrsetParm()
6632                                 if (tempNumStates != ns)  in DoPrsetParm()
6634 …int ("%s   Found %d dirichlet parameters but expecting %d\n", spacer, tempNumStates, modelParams[i…  in DoPrsetParm()
6660                             if (tempNumStates == 0)  in DoPrsetParm()
6673                                 if (tempNumStates == ns)  in DoPrsetParm()
6702 …sPrint ("%s   Found %d state frequencies but expecting %d\n", spacer, tempNumStates, modelParams[i…  in DoPrsetParm()