209   void processSyntenys_each(Container& Syntenys, const FR2& Bf,
212   void processSyntenys_each(Container& Syntenys, const FR2& Bf,  in processSyntenys_each()
214     processSyntenys_each(Syntenys, Bf, [](const Container& s, const FR2& Bf) { },  in processSyntenys_each()  argument
220   void processSyntenys_long_each(Container& Syntenys, const FR2& Bf,
224   void processSyntenys_long_each(Container& Syntenys, const FR2& Bf,  in processSyntenys_long_each()
226     processSyntenys_long_each(Syntenys, Bf, [](const Container& s, const FR2& Bf) { },  in processSyntenys_long_each()  argument
271                           const FastaRecord& Af, const FastaRecord& Bf,  in printDeltaAlignments()  argument
273   printDeltaAlignments(Alignments, Af.Id(), Af.len(), Bf.Id(), Bf.len(), DeltaFile);  in printDeltaAlignments()
286 void printSyntenys(const std::vector<Synteny<FastaRecord> >& Syntenys, const FastaRecord& Bf, std::…
315 void merge_syntenys::processSyntenys_each(Container& Syntenys, const FR2& Bf,  in processSyntenys_each()  argument
333 …extendClusters (CurrSp.clusters, CurrSp.AfP->seq(), CurrSp.AfP->len(), Bf.seq(), Bf.len(), alignme…  in processSyntenys_each()
335     matches(std::move(alignments), *CurrSp.AfP, Bf);  in processSyntenys_each()
339   clusters(Syntenys, Bf);  in processSyntenys_each()
344 void merge_syntenys::processSyntenys_long_each(Container& Syntenys, const FR2& Bf,  in processSyntenys_long_each()  argument
371 …extendClusters (CurrSp->clusters, CurrSp->AfP->seq(), CurrSp->AfP->len(), Bf.seq(), Bf.len(), alig…  in processSyntenys_long_each()
373       matches(std::move(alignments), *CurrSp->AfP, Bf);  in processSyntenys_long_each()
378   clusters(Syntenys, Bf);  in processSyntenys_long_each()
383 void printSyntenys(const std::vector<Synteny<FastaRecord> > & Syntenys, const FastaRecord& Bf, std:…  in printSyntenys()  argument
394       ClusterFile << '>' << Sp.AfP->Id() << ' ' << Bf.Id() << ' '  in printSyntenys()
395                   << Sp.AfP->len() << ' ' << Bf.len() << '\n';  in printSyntenys()
402 …              << std::setw(8) << (Cp.dirB == FORWARD_CHAR ? Mp->sB : revC(Mp->sB, Bf.len())) << ' '  in printSyntenys()