Lines Matching refs:feat_from
1225 TSeqPos feat_from = interval.GetFrom(); in SeqLocAdjustForTrim() local
1239 if (feat_from >= cut_from && feat_to <= cut_to) in SeqLocAdjustForTrim()
1243 trim5 += feat_from - feat_to + 1; in SeqLocAdjustForTrim()
1248 if (feat_from > cut_to) in SeqLocAdjustForTrim()
1251 feat_from -= cut_size; in SeqLocAdjustForTrim()
1253 interval.SetFrom(feat_from); in SeqLocAdjustForTrim()
1283 if (feat_from >= cut_from) { in SeqLocAdjustForTrim()
1285 TSeqPos diff = cut_to + 1 - feat_from; in SeqLocAdjustForTrim()
1288 feat_from = cut_to + 1; in SeqLocAdjustForTrim()
1289 feat_from -= cut_size; in SeqLocAdjustForTrim()
1292 interval.SetFrom(feat_from); in SeqLocAdjustForTrim()
1555 TSeqPos feat_from = interval.GetFrom(); in SeqLocAdjustForInsert() local
1569 if (feat_from > insert_from) { in SeqLocAdjustForInsert()
1570 feat_from += insert_size; in SeqLocAdjustForInsert()
1572 interval.SetFrom(feat_from); in SeqLocAdjustForInsert()
1578 if (feat_from <= insert_from && feat_to >= insert_from) in SeqLocAdjustForInsert()
1744 TSeqPos feat_from = before.GetFrom(); in SplitLocationForGap() local
1752 if (feat_from > stop && !(options & eSplitLocOption_split_in_intron)) { in SplitLocationForGap()
1758 if (feat_from < start && feat_to > stop) { in SplitLocationForGap()
1768 if (stop + 1 > feat_from) { in SplitLocationForGap()
1775 if (feat_from < start) { in SplitLocationForGap()