Lines Matching refs:SetDelta

263 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("ATGATGATGCCC", objects::CSeq_inst::eMol_dn…  in TryOneCDSCase()
267 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in TryOneCDSCase()
268 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("CCCAAATTTTAA", objects::CSeq_inst::eMol_dn… in TryOneCDSCase()
362 seq.SetInst().SetExt().SetDelta().AddLiteral(nuc_before, objects::CSeq_inst::eMol_dna); in SetUpDelta()
366 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in SetUpDelta()
367 …seq.SetInst().SetExt().SetDelta().AddLiteral(nuc_after.substr(gap_len - 12), objects::CSeq_inst::e… in SetUpDelta()
573 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("ATGATGATGCCC", objects::CSeq_inst::eMol_dn… in BOOST_AUTO_TEST_CASE()
577 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in BOOST_AUTO_TEST_CASE()
578 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("CCCAAATTTTAA", objects::CSeq_inst::eMol_dn… in BOOST_AUTO_TEST_CASE()
625 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("ATGATGATGCCC", objects::CSeq_inst::eMol_dn… in BOOST_AUTO_TEST_CASE()
629 nuc->SetSeq().SetInst().SetExt().SetDelta().Set().push_back(gap_seg); in BOOST_AUTO_TEST_CASE()
630 …nuc->SetSeq().SetInst().SetExt().SetDelta().AddLiteral("CCCAAATTTTAA", objects::CSeq_inst::eMol_dn… in BOOST_AUTO_TEST_CASE()
670 …seq.SetInst().SetExt().SetDelta().AddLiteral("NNNATGCCCANNNTGATGCCCNNN", objects::CSeq_inst::eMol_… in AddNsToGoodDelta()
674 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg1); in AddNsToGoodDelta()
675 …seq.SetInst().SetExt().SetDelta().AddLiteral("NNNCCCATGNNNATGATGNNN", objects::CSeq_inst::eMol_dna… in AddNsToGoodDelta()
680 seq.SetInst().SetExt().SetDelta().Set().push_back(gap_seg2); in AddNsToGoodDelta()
681 seq.SetInst().SetExt().SetDelta().AddLiteral("CCCATGNNNATGATG", objects::CSeq_inst::eMol_dna); in AddNsToGoodDelta()