640   seedParallelItems *returnData; /*structure to return*/  in seedParallelFill()  local
643     returnData = (seedParallelItems *) ckalloc(sizeof(seedParallelItems));  in seedParallelFill()
645     returnData->rdpt = readdb_attach(rdpt);  in seedParallelFill()
647     if (returnData->rdpt == NULL) {  in seedParallelFill()
648         MemFree(returnData);  in seedParallelFill()
652     returnData->query_seq = query_seq;  in seedParallelFill()
653     returnData->lenPatMatch = lenPatMatch;  in seedParallelFill()
654     returnData->gap_align = GapAlignBlkNew(1,1);   in seedParallelFill()
655     returnData->gap_align->gap_open = gap_align->gap_open;  in seedParallelFill()
656     returnData->gap_align->gap_extend = gap_align->gap_extend;  in seedParallelFill()
657     returnData->gap_align->decline_align = gap_align->decline_align;  in seedParallelFill()
658     returnData->gap_align->x_parameter = gap_align->x_parameter;  in seedParallelFill()
659     returnData->gap_align->matrix = gap_align->matrix;  in seedParallelFill()
661     returnData->is_dna = is_dna;  in seedParallelFill()
662     returnData->patternSearch = (patternSearchItems *) ckalloc(sizeof(patternSearchItems));  in seedParallelFill()
663     returnData->patternSearch->numWords = patternSearch->numWords;  in seedParallelFill()
664     returnData->patternSearch->match_mask = patternSearch->match_mask;  in seedParallelFill()
666       returnData->patternSearch->match_maskL[i] = patternSearch->match_maskL[i];  in seedParallelFill()
669 	returnData->patternSearch->bitPatternByLetter[i][j] =  in seedParallelFill()
671     returnData->patternSearch->whichPositionPtr = patternSearch->whichPositionsByCharacter;  in seedParallelFill()
673       returnData->patternSearch->whichPositionsByCharacter[i] =  in seedParallelFill()
677 	returnData->patternSearch->SLL[i][j] =  in seedParallelFill()
679     returnData->patternSearch->flagPatternLength = patternSearch->flagPatternLength;  in seedParallelFill()
680     returnData->patternSearch->patternProbability = patternSearch->patternProbability;  in seedParallelFill()
681     returnData->patternSearch->whichMostSpecific = patternSearch->whichMostSpecific;  in seedParallelFill()
683       returnData->patternSearch->numPlacesInWord[i] =  in seedParallelFill()
687       returnData->patternSearch->spacing[i] =  in seedParallelFill()
691       returnData->patternSearch->inputPatternMasked[i] =  in seedParallelFill()
694    returnData->patternSearch->highestPlace = patternSearch->highestPlace;  in seedParallelFill()
695    returnData->patternSearch->minPatternMatchLength = patternSearch->minPatternMatchLength;  in seedParallelFill()
696    returnData->patternSearch->wildcardProduct = patternSearch->wildcardProduct;  in seedParallelFill()
698    returnData->seedSearch = (seedSearchItems *) ckalloc(sizeof(seedSearchItems));  in seedParallelFill()
700      returnData->seedSearch->charMultiple[i] = seedSearch->charMultiple[i];  in seedParallelFill()
701    returnData->seedSearch->paramC = seedSearch->paramC;  in seedParallelFill()
702    returnData->seedSearch->paramLambda = seedSearch->paramLambda;  in seedParallelFill()
703    returnData->seedSearch->paramK = seedSearch->paramK;  in seedParallelFill()
704    returnData->seedSearch->cutoffScore = seedSearch->cutoffScore;  in seedParallelFill()
706      returnData->seedSearch->standardProb[i] = seedSearch->standardProb[i];  in seedParallelFill()
708      returnData->seedSearch->order[i] = seedSearch->order[i];  in seedParallelFill()
710      returnData->seedSearch->pchars[i] = seedSearch->pchars[i];  in seedParallelFill()
712      returnData->seedSearch->name_space[i] = seedSearch->name_space[i];  in seedParallelFill()
714      returnData->seedSearch->pat_space[i] = seedSearch->pat_space[i];  in seedParallelFill()
716     returnData->seedResults =   in seedParallelFill()
718     returnData->totalOccurrences = 0;  in seedParallelFill()
719     returnData->matchIndex = 0;  in seedParallelFill()
720     returnData->thr_info = thr_info;  in seedParallelFill()
722     return(returnData);  in seedParallelFill()