Lines Matching refs:hseq
190 hsp->hseq = MemNew(length+1); in BXMLGetSeqLineForDenseDiag()
233 hsp->hseq[i] = t_res; in BXMLGetSeqLineForDenseDiag()
274 hsp->hseq = MemNew(length+1); in BXMLGetSeqLineForDenseSeg()
316 hsp->hseq[abs_index] = '-'; in BXMLGetSeqLineForDenseSeg()
327 hsp->hseq[abs_index] = t_res; in BXMLGetSeqLineForDenseSeg()
338 hsp->hseq[abs_index] = t_res; in BXMLGetSeqLineForDenseSeg()
383 hsp->hseq = MemNew(length+1); in BXMLGetSeqLineForStdSeg()
424 hsp->hseq[abs_index] = residue1; in BXMLGetSeqLineForStdSeg()
453 hsp->hseq[abs_index] = residue1; in BXMLGetSeqLineForStdSeg()
456 hsp->hseq[abs_index] = residue2; in BXMLGetSeqLineForStdSeg()
494 hsp->hseq[abs_index] = residue1; in BXMLGetSeqLineForStdSeg()
504 hsp->hseq[abs_index] = residue1; in BXMLGetSeqLineForStdSeg()
526 hsp->hseq[abs_index] = '-'; /* gap character */ in BXMLGetSeqLineForStdSeg()
537 hsp->hseq[abs_index] = '-'; /* gap character */ in BXMLGetSeqLineForStdSeg()