Lines Matching refs:dpScoutState
98 DPScoutState_<Default> dpScoutState; in globalAlignment() local
99 …TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(row(align, 0)), source(row(ali… in globalAlignment()
175 DPScoutState_<Default> dpScoutState; in globalAlignment() local
176 …TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, source(gapsH), source(gapsV), scoring… in globalAlignment()
257 DPScoutState_<Default> dpScoutState; in globalAlignment() local
258 … TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, value(stringSet(alignmentGraph), 0), in globalAlignment()
337 DPScoutState_<Default> dpScoutState; in globalAlignment() local
338 …TScoreValue res = _setUpAndRunAlignment(trace, dpScoutState, value(strings, 0), value(strings, 1),… in globalAlignment()
415 DPScoutState_<Default> dpScoutState; in globalAlignmentScore() local
417 return _setUpAndRunAlignment(traceSegments, dpScoutState, seqH, seqV, scoringScheme, in globalAlignmentScore()
491 DPScoutState_<Default> dpScoutState; in globalAlignmentScore() local
493 return _setUpAndRunAlignment(traceSegments, dpScoutState, strings[0], strings[1], scoringScheme, in globalAlignmentScore()