Lines Matching refs:window_bp

36   ldip->window_bp = 0xffffffffU;  in ld_epi_init()
1481 uint32_t window_bp = ldip->flipscan_window_bp; in flipscan() local
1603 …_info_ptr->chrom_file_order[chrom_fo_idx], max_window_locus_ct * 2 + 1, window_bp * 2, max_window_… in flipscan()
1767 if (marker_pos_thresh < window_bp) { in flipscan()
1770 marker_pos_thresh -= window_bp; in flipscan()
5261 uint32_t window_bp = ldip->window_bp; in ld_report_dprime() local
5409 …_ptr->chrom_fo_vidx_start[chrom_fo_idx]), marker_uidx1, window_size_m1, window_bp, window_cm, &uii… in ld_report_dprime()
5458 …->chrom_fo_vidx_start[chrom_fo_idx]), marker_uidx1_tmp, window_size_m1, window_bp, window_cm, &win… in ld_report_dprime()
5460 …rker_cms, marker_exclude, marker_uidx1_tmp, chrom_last, window_size_m1, window_bp, window_cm, &win… in ld_report_dprime()
5476 if (cur_marker_pos > window_bp) { in ld_report_dprime()
5477 cur_marker_pos -= window_bp; in ld_report_dprime()
5494 cur_marker_pos = marker_pos[marker_uidx1_tmp] + window_bp; in ld_report_dprime()
5697 uint32_t window_bp = ldip->window_bp; in ld_report_regular() local
5854 …_ptr, chrom_info_ptr->chrom_file_order[chrom_fo_idx], window_size_ceil, window_bp * (idx1_subset +… in ld_report_regular()
5956 …_ptr->chrom_fo_vidx_start[chrom_fo_idx]), marker_uidx1, window_size_m1, window_bp, window_cm, &uii… in ld_report_regular()
6004 …->chrom_fo_vidx_start[chrom_fo_idx]), marker_uidx1_tmp, window_size_m1, window_bp, window_cm, &win… in ld_report_regular()
6006 …rker_cms, marker_exclude, marker_uidx1_tmp, chrom_last, window_size_m1, window_bp, window_cm, &win… in ld_report_regular()
6022 if (cur_marker_pos > window_bp) { in ld_report_regular()
6023 cur_marker_pos -= window_bp; in ld_report_regular()
6040 cur_marker_pos = marker_pos[marker_uidx1_tmp] + window_bp; in ld_report_regular()
6339 uint32_t window_bp = ldip->show_tags_bp; in show_tags() local
6496 …m_info_ptr, chrom_info_ptr->chrom_file_order[chrom_fo_idx], 0x7fffffff, window_bp * 2, max_window_… in show_tags()
6610 if (marker_pos_thresh < window_bp) { in show_tags()
6613 marker_pos_thresh -= window_bp; in show_tags()